This package performs search for the global minimum of a very complex non-linear objective function with a very large number of optima.

Estimate generalized additive mixed models via a version of function gamm from the mgcv package, using the lme4 packagefor estimation.

Routino is an application for finding a route between two points using the dataset of topographical information collected by https://www.OpenStreetMap.org.

rocBLAS is the ROCm Basic Linear Algebra Subprograms (BLAS) library. rocBLAS is implemented in the HIP programming language and optimized for AMD GPUs.

A clean and customizable GTK-based greetd greeter written in Rust using Relm4. This is meant to be run under a Wayland compositor (like Sway).

This package provides extra utility functions to perform common tasks in the analysis of omics data, leveraging and enhancing features provided by Bioconductor packages.

This package provides functions and vignettes to update data sets in Ecdat and to create, manipulate, plot, and analyze those and similar data sets.

This package provides a collection of helper functions designed to help you to better understand object oriented programming in R, particularly using S3.

This package provides a collection of ggplot2 color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.

This package provides a package for quantifying, profiling and removing cell free mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments.

This package provides tools to execute arbitrary R or C functions some time after the current time, after the R execution stack has emptied.

Sch-rnd is a standalone and workflow agnostic schematics capture tool for PCB, part of the RiNgDove EDA suite.

Robocut is a simple graphical program that allows you to cut graphics with Graphtec and Sihouette plotting cutters using an SVG file as its input.

Oj is a JSON parser and generator for Ruby, where the encoding and decoding of JSON is implemented as a C extension to Ruby.

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.

The PIUMA package offers a tidy pipeline of Topological Data Analysis frameworks to identify and characterize communities in high and heterogeneous dimensional data.

The RSP markup language provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. Today's date is <%=Sys.Date()%>. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. RSP is ideal for self-contained scientific reports and R package vignettes.

SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

This is a port of the type guesser from the readr package, the so-called readr first edition parsing engine, now superseded by vroom.

This package provides functions for obtaining the density, random variates and maximum likelihood estimates of the Zero-truncated Poisson lognormal distribution and their mixture distribution.

This package provides functions for working with legends and axis lines of ggplot2, facets that repeat axis lines on all panels, and some knitr extensions.

This package provides software to accompany the book "Wavelet Methods for Time Series Analysis", Donald B. Percival and Andrew T. Walden, Cambridge University Press, 2000.