Model fitting, model selection and parameter tuning procedures for a class of random network models. Many useful network modeling, estimation, and processing methods are included. The work to build and improve this package is partially supported by the NSF grants DMS-2015298 and DMS-2015134.

This package implements a null model analysis to quantify concurrent temporal niche overlap (i.e., activity or phenology) among biological identities (e.g., individuals, populations, species) using the Rosario randomization algorithm Castro-Arellano et al. (2010) <doi:10.1111/j.2041-210X.2010.00031.x>.

This package provides tools for the comparison of distributions. This includes nonparametric estimation of the relative distribution PDF and CDF and numerical summaries as described in "Relative Distribution Methods in the Social Sciences" by Mark S. Handcock and Martina Morris, Springer-Verlag, 1999, Springer-Verlag, ISBN 0387987789.

This package provides methods for caching or memoization of objects and results. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).

Import data written in the JCAMP-DX format. This is an instrument-independent format used in the field of spectroscopy. Examples include IR, NMR, and Raman spectroscopy. See the vignette for background and supported formats. The official JCAMP-DX site is <http://www.jcamp-dx.org/>.

Data objects in R can be rendered as HTML tables using the JavaScript library ag-grid (typically via R Markdown or Shiny'). The ag-grid library has been included in this R package. The package name RagGrid is an abbreviation of R agGrid'.

This package provides an interface to access data from the International Union for Conservation of Nature (IUCN) Red List <https://api.iucnredlist.org/api-docs/index.html>. It allows users to retrieve up-to-date information on species conservation status, supporting biodiversity research and conservation efforts.

This package implements the P-model (Stocker et al., 2020 <doi:10.5194/gmd-13-1545-2020>), predicting acclimated parameters of the enzyme kinetics of C3 photosynthesis, assimilation, and dark respiration rates as a function of the environment (temperature, CO2, vapour pressure deficit, light, atmospheric pressure).

FlowSOM offers visualization options for cytometry data, by using self-organizing map clustering and minimal spanning trees.

This package provides more than 2000 annotated position frequency matrices from nine public sources, for multiple organisms.

This package provides the core data structure and API to represent and interact with gated cytometry data.

This package contains supporting data sets that are used in other packages maintained by Torsten Hothorn.

Create interactive 3D scatter plots, network plots, and globes in R using the three.js visualization library.

This is a supplement to the maps package providing the larger and/or higher-resolution databases.

This package can be used to solve Linear Programming / Linear Optimization problems by using the simplex algorithm.

This package provides a subclass of Object that includes the Comparable module for handling dates.

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method.

SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) assembled using data from public repositories.

This package creates bubbles within shiny and rmarkdown backgrounds using the bubbly-bg JavaScript library.

This package provides functions to simplify the process of preparing event and transaction for cohort analysis.

Facilitates access to sample datasets from the EunomiaDatasets repository (<https://github.com/ohdsi/EunomiaDatasets>).

Base maps are transformed to focus on a specific location using an azimuthal logarithmic distance transformation.

This package contains data for software hotspot analysis, along with a function performing the analysis itself.

This package provides fast application of image filters to data matrices, using R and C++ algorithms.