Seq2seq time-feature analysis based on variational model, with a wide range of distributions available for the latent variable.

This package performs correlation matrix segmentation and applies a test procedure to detect highly correlated regions in gene expression.

Detect libraries used in a project and automatically create software bibliographies in PDF', Word', Rmarkdown', and BibTeX formats.

Bayesian estimation for undirected graphical models using spike-and-slab priors. The package handles continuous, discrete, and mixed data.

This package provides a universal non-uniform random number generator for quite arbitrary distributions with piecewise twice differentiable densities.

Includes functions for mapping named lists to function arguments, random strings, pasting and combining rows together across columns, etc.

Create additional rows and columns on broom::tidy() output to allow for easier control on categorical parameter estimates.

Several functions to allow comparisons of data across different geographies, in particular for Canadian census data from different censuses.

Analysis of minor alleles in Illumina sequencing data of viral genomes. Functions in vivaldi primarily operate on vcf files.

This package provides a collection of the functions for estimation, hypothesis testing, prediction for stationary vector autoregressive models.

Book is "Linear Mixed Models: A Practical Guide Using Statistical Software" published in 2006 by Chapman Hall / CRC Press.

This rofi plugin tries to provide an interface to the buku bookmark manager, improving on the (outdated) buku_run script.

This package provides a simple and flexible way to generate Circos 2D track plot images. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics packages that comes with the base installation.

Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.

This package provides functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.

Interface to access data via the United States Department of Agriculture's National Agricultural Statistical Service (NASS) Quick Stats web API <https://quickstats.nass.usda.gov/api/>. Convenience functions facilitate building queries based on available parameters and valid parameter values. This product uses the NASS API but is not endorsed or certified by NASS.

Encapsulates functions to streamline calls from R to the REDCap API. REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The Application Programming Interface (API) offers an avenue to access and modify data programmatically, improving the capacity for literate and reproducible programming.

This package provides clean, tidy access to Australian Electoral Commission (AEC) federal election data. Includes results for the House of Representatives and Senate from 2007 onwards, at both division and polling place level. Data is downloaded directly from the AEC <https://results.aec.gov.au> on first use and cached locally for subsequent calls.

Various functions for querying and reshaping dependency trees, as for instance created with the spacyr or udpipe packages. This enables the automatic extraction of useful semantic relations from texts, such as quotes (who said what) and clauses (who did what). Method proposed in Van Atteveldt et al. (2017) <doi:10.1017/pan.2016.12>.

This package provides Cramer-Von Mises and Anderson-Darling tests of goodness-of-fit for continuous univariate distributions, using efficient algorithms.

This package provides functions to access Twitter's filter, sample, and user streams, and to parse the output into data frames.

This package provides a collection of meta-analysis datasets for teaching purposes, illustrating/testing meta-analytic methods, and validating published analyses.

This package provides a collection of HTML, JavaScript, and CSS assets that dynamically generate beautiful documentation from a Swagger compliant API.

This package allows the user to specify debug messages as special string constants, and control debugging of packages via environment variables.