Convert semi-structured log files (such as Apache access.log files) into a tabular format (data.frame) using a standard template system.

This package provides a set of functions for generating HTML to embed hosted video in your R Markdown documents or Shiny applications.

Various methods to count ballots in voting systems are provided. Functions to check validity of ballots are also provided to ensure flexibility.

This package provides a Julia interface structured according to the general form described in package XR and in the book "Extending R".

This package was previously an R wrapper of the ARPACK library, and now a shell of the R package RSpectra, an R interface to the Spectra library for solving large scale eigenvalue/vector problems. The current version of rARPACK simply imports and exports the functions provided by RSpectra. New users of rARPACK are advised to switch to the RSpectra package.

Low- and high-level wrappers for Gemma's RESTful API. They enable access to curated expression and differential expression data from over 10,000 published studies. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles.

RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.

This package provides a simple and intuitive pipe-friendly framework, coherent with the tidyverse design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.

Computing singular value decomposition with robustness is a challenging task. This package provides an implementation of computing robust SVD using density power divergence (<doi:10.48550/arXiv.2109.10680>). It combines the idea of robustness and efficiency in estimation based on a tuning parameter. It also provides utility functions to simulate various scenarios to compare performances of different algorithms.

An implementation of the WOFOST ("World Food Studies") crop growth model. WOFOST is a dynamic simulation model that uses daily weather data, and crop, soil and management parameters to simulate crop growth and development. See De Wit et al. (2019) <doi:10.1016/j.agsy.2018.06.018> for a recent review of the history and use of the model.

R on FHIR is an easy to use wrapper around the HL7 FHIR REST API (STU 3 and R4). It provides tools to easily read and search resources on a FHIR server and brings the results into the R environment. R on FHIR is based on the FhirClient of the official HL7 FHIR .NET API', also made by Firely.

This package implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

This package computes moments of univariate truncated T distribution. There is only one exported function, e_trunct, which should be seen for details.

This package lets you fit a variety of Bayesian latent variable models, including confirmatory factor analysis, structural equation models, and latent growth curve models.

This package provides new statistics, new geometries and new positions for ggplot2 and a suite of functions to facilitate the creation of statistical plots.

This package provides functions to extract commonly used fragmentation metrics to quantify time accumulation strategies based on minute level actigraphy-measured activity counts data.

This package provides a collection of artificial and real-world machine learning benchmark problems, including, e.g., several data sets from the UCI repository.

This package provides a way to access the System Management Unit for certain AMD Ryzen processors. This includes access to the System Management Network.

Tilt is a thin interface over a number of different Ruby template engines in an attempt to make their usage as generic as possible.

Computation of bootstrap confidence intervals in an almost automatic fashion as described in Efron and Narasimhan (2020, <doi:10.1080/10618600.2020.1714633>).

Bandwidth selectors for local linear quantile regression, including cross-validation and plug-in methods. The local linear quantile regression estimate is also implemented.

This package provides a box compatible custom language parser for the languageserver package to provide completion and signature hints in code editors.

This package provides tools that allow developers to write functions for cross-validation with minimal programming effort and assist users with model selection.