MyGene.Info provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. Mygene is a Python wrapper to access MyGene.Info services.

This package provides a system to solve probabilistic logic programs with clingo. It can solve the reasoning tasks of finding the most probable model as well as finding all models and their probabilities.

A Procfile is a file which describes how to run an application consisting of several processes. honcho starts all listed processes. The output of all running processes is collected by honcho and displayed.

George is a fast and flexible Python library for Gaussian Process (GP) Regression, focused on efficiently evaluating the marginalized likelihood of a dataset under a GP prior, even as this dataset gets Big.

Pysam is a Python module for reading and manipulating files in the SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It also includes an interface for tabix.

The SciPy library is one of the core packages that make up the SciPy stack. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization.

Nipype provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages.

caerus is Python package to compute the local-minima with the corresponding local-maxima within the given time-frame. This approach is designed to for stock-market valley and peak detection.

This package provides Python bindings for spoa, a C++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences

TinyDB is a small document oriented database written in pure Python with no external dependencies. The targets are small apps that would be blown away by a SQL-DB or an external database server.

HTTPX2 is a fully featured HTTP client library for Python. It includes an integrated command line client, has support for both HTTP/1.1 and HTTP/2, and provides both sync and async APIs.

Inform is designed to display messages from programs that are typically run from a console. It provides a collection of ‘print’ functions that allow you to simply and cleanly print different types of messages.

DotMap is a dot-access dictionary subclass that has dynamic hierarchy creation, can be initialized with keys, can be initialized from a dictionary, can be convert to a dictionary, and is ordered by insertion.

Radian is an alternative console for the R program with multiline editing and rich syntax highlight. One would consider Radian as a IPython clone for R, though its design is more aligned to Julia.

This package provides a collection of (mostly) analytic functions in geophysics. We take an object oriented approach with the aim of having users be able to readily interact with the functions using Jupyter.

VorBin package is a Python implementation of the two-dimensional adaptive spatial binning method of Cappellari & Copin (2003). It uses Voronoi tessellations to bin data to a given minimum signal-to-noise ratio.

This package provides a library for the analysis of networks and graphs. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.

This is a module for handling LDAP operations in Python. LDAP entries are mapped to a special Python case-insensitive dictionary, tracking the changes of the dictionary to modify the entry on the server easily.

Brille is a C++ library for symmetry operations and linear interpolation within an irreducible part of the first Brillouin zone. It provides Python bindings via pybind11 for use in phonon calculations and inelastic neutron scattering simulations.

pynrrd is a Python module for reading and writing NRRD files (format designed to support scientific visualization and image processing involving N-dimensional raster data) into and from numpy arrays.

With apipkg you can control the exported namespace of a Python package and greatly reduce the number of imports for your users. It is a small pure Python module that works on virtually all Python versions.

python-schema is a library for validating Python data structures, such as those obtained from config-files, forms, external services or command-line parsing, converted from JSON/YAML (or something else) to Python data-types.

This package provides a Python module to read and write the Newick format. In mathematics and phylogenetics, Newick tree format is a way of representing graph-theoretical trees with edge lengths using parentheses and commas.

Mellon is a non-parametric cell-state density estimator based on a nearest-neighbors-distance distribution. It uses a sparse gaussian process to produce a differntiable density function that can be evaluated out of sample.