Sample size calculations in causal inference with observational data are increasingly desired. This package is a tool to calculate sample size under prespecified power with minimal summary quantities needed.

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

This package implements the s-values proposed by Ed. Leamer. It provides a context-minimal approach for sensitivity analysis using extreme bounds to assess the sturdiness of regression coefficients.

Historical voting data of the United Nations General Assembly. This includes votes for each country in each roll call, as well as descriptions and topic classifications for each vote.

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

This is a package for fast Non-negative Matrix Factorization (NMF) with automatic rank-determination for dimension reduction of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and similar.

This package performs score test using saddlepoint approximation to estimate the null distribution. It also prepares summary statistics for meta-analysis and performs meta-analysis to combine multiple association results.

This package provides auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

Odds and ends collection miscellania. Extra functionality for slices (.find(), RevSlice), strings and other things. Things in odds may move to more appropriate crates if we find them.

Odds and ends collection miscellania. Extra functionality for slices (.find(), RevSlice), strings and other things. Things in odds may move to more appropriate crates if we find them.

Odds and ends collection miscellania. Extra functionality for slices (.find(), RevSlice), strings and other things. Things in odds may move to more appropriate crates if we find them.

This package provides a collection of functions for computing "r-values" from various kinds of user input such as MCMC output or a list of effect size estimates and associated standard errors. Given a large collection of measurement units, the r-value, r, of a particular unit is a reported percentile that may be interpreted as the smallest percentile at which the unit should be placed in the top r-fraction of units.

Pure Rust implementation of SHA-3, a family of Keccak-based hash functions including the SHAKE family of eXtendable-Output Functions (XOFs), as well as the accelerated variant TurboSHAKE

Datasets from books, papers, and websites related to agriculture. Example graphics and analyses are included. Data come from small-plot trials, multi-environment trials, uniformity trials, yield monitors, and more.

This package implements Roy's bivariate geometric model (Roy (1993) <doi:10.1006/jmva.1993.1065>): joint probability mass function, distribution function, survival function, random generation, parameter estimation, and more.

Statistical modeling for correlated count data using the beta-binomial distribution, described in Martin et al. (2020) <doi:10.1214/19-AOAS1283>. It allows for both mean and overdispersion covariates.

This package implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package config'.

This package provides a GUI with which users can construct and interact with Canonical Correspondence Analysis and Canonical Non-Symmetrical Correspondence Analysis and provides inferential results by using Bootstrap Methods.

This package performs generalized Susceptible-Exposed-Infected-Recovered (SEIR) modeling to predict epidemic curves. The method is described in Peng et al. (2020) <doi:10.1101/2020.02.16.20023465>.

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

This package provides utilities for encoding and decoding coordinates to/from Hilbert curves based on the iterative encoding implementation described in Chen et al. (2006) <doi:10.1002/spe.793>.

Tests for a treatment effect using surrogate marker information accounting for heterogeneity in the utility of the surrogate. Details are described in Parast et al (2022) <arXiv:2209.08315>.

Carries out instrumental variable estimation of causal effects, including power analysis, sensitivity analysis, and diagnostics. See Kang, Jiang, Zhao, and Small (2020) <http://pages.cs.wisc.edu/~hyunseung/> for details.

Read data from LimeSurvey (<https://www.limesurvey.org/>) in a comfortable way. Heavily inspired by limer (<https://github.com/cloudyr/limer/>), which lacked a few comfort features for me.