This package provides a framework for creating rich interactive analyses for the jamovi platform (see <https://www.jamovi.org> for more information).

This package provides a calculation tool to obtain the 5-year or 10-year risk of cardiovascular disease from various risk models.

An R port of the margins command from Stata', which can be used to calculate marginal (or partial) effects from model objects.

This package creates data with identical statistics (metamers) using an iterative algorithm proposed by Matejka & Fitzmaurice (2017) <DOI:10.1145/3025453.3025912>.

Apply unsupervised segmentation algorithms included in Orfeo ToolBox software (<https://www.orfeo-toolbox.org/>), such as mean shift or watershed segmentation.

This package creates an interactive scatterplot matrix using the D3 JavaScript library. See <https://d3js.org/> for more information on D3.

This package provides some easy-to-use functions to interpolate species range based on species occurrences and to estimate centers of biodiversity.

Sensitivity analysis for trials with irregular and informative assessment times, based on a new influence function-based, augmented inverse intensity-weighted estimator.

Convert semi-structured log files (such as Apache access.log files) into a tabular format (data.frame) using a standard template system.

Getting TikTok data (<https://www.tiktok.com/>) through the official and unofficial APIsâ in other words, you can track TikTok'.

This package performs 18 omnibus tests yielding a total of 28 distinct methodological variations for testing the composite hypothesis of variance homogeneity.

Various methods to count ballots in voting systems are provided. Functions to check validity of ballots are also provided to ensure flexibility.

This package provides a set of functions for generating HTML to embed hosted video in your R Markdown documents or Shiny applications.

This package was previously an R wrapper of the ARPACK library, and now a shell of the R package RSpectra, an R interface to the Spectra library for solving large scale eigenvalue/vector problems. The current version of rARPACK simply imports and exports the functions provided by RSpectra. New users of rARPACK are advised to switch to the RSpectra package.

Low- and high-level wrappers for Gemma's RESTful API. They enable access to curated expression and differential expression data from over 10,000 published studies. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles.

RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.

This package provides a simple and intuitive pipe-friendly framework, coherent with the tidyverse design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.

Computing singular value decomposition with robustness is a challenging task. This package provides an implementation of computing robust SVD using density power divergence (<doi:10.48550/arXiv.2109.10680>). It combines the idea of robustness and efficiency in estimation based on a tuning parameter. It also provides utility functions to simulate various scenarios to compare performances of different algorithms.

An implementation of the WOFOST ("World Food Studies") crop growth model. WOFOST is a dynamic simulation model that uses daily weather data, and crop, soil and management parameters to simulate crop growth and development. See De Wit et al. (2019) <doi:10.1016/j.agsy.2018.06.018> for a recent review of the history and use of the model.

This package provides an R interface to the RCSB Protein Data Bank ('PDB') Search and Data APIs (<https://www.rcsb.org/>). Supports full-text, attribute, sequence, motif, structure, and chemical searches; retrieval of entry-, assembly-, polymer-entity-, and chemical-component-level metadata; and conversion of API responses into analysis-ready tables and typed R objects for reproducible structural bioinformatics workflows.

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

This package implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

This package provides functions to extract commonly used fragmentation metrics to quantify time accumulation strategies based on minute level actigraphy-measured activity counts data.

This package lets you fit a variety of Bayesian latent variable models, including confirmatory factor analysis, structural equation models, and latent growth curve models.