This package provides a collection of datasets for the upcoming book "Graficas versatiles con ggplot: Analisis visuales de datos", by Raymond L. Tremblay and Julian Hernandez-Serano.

Extends ggplot2 functionality to the partykit package. ggparty provides the necessary tools to create clearly structured and highly customizable visualizations for tree-objects of the class party'.

Convert between bookmaker odds and probabilities. Eight different algorithms are available, including basic normalization, Shin's method (Hyun Song Shin, (1992) <doi:10.2307/2234526>), and others.

This package provides tools to access the J-STAGE WebAPI and retrieve information published on J-STAGE <https://www.jstage.jst.go.jp/browse/-char/ja>.

Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a landmark time. Details are described in Garcia (2021) <doi:10.1093/biostatistics/kxz052>.

Collections of functions allowing random number generations and estimation of Liouville copulas, as described in Belzile and Neslehova (2017) <doi:10.1016/j.jmva.2017.05.008>.

This package provides functions for computing (Mixed and Multiscale) Geographically Weighted Regression with spatial autocorrelation, Geniaux and Martinetti (2017) <doi:10.1016/j.regsciurbeco.2017.04.001>.

Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.

Fits the Poisson-Tweedie generalized linear mixed model described in Signorelli et al. (2021, <doi:10.1177/1471082X20936017>). Likelihood approximation based on adaptive Gauss Hermite quadrature rule.

Statically determine and visualize the function dependencies within and across packages. This may be useful for managing function dependencies across a code base of multiple R packages.

Differential analysis of tumor tissue immune cell type abundance based on RNA-seq gene-level expression from The Cancer Genome Atlas (TCGA; <https://pancanatlas.xenahubs.net>) database.

Class definitions and constructors for pseudo-vectors containing all permutations, combinations and subsets of objects taken from a vector. Simplifies working with structures commonly encountered in combinatorics.

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Saves the delayed operations of a DelayedArray to a HDF5 file. This enables efficient recovery of the DelayedArray's contents in other languages and analysis frameworks.

This package provides a set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

This package computes Hartigan's dip test statistic for unimodality, multimodality and provides a test with simulation based p-values, where the original public code has been corrected.

This package provides functions to calculate: moments, Pearson's kurtosis, Geary's kurtosis and skewness; it also includes tests related to them (Anscombe-Glynn, D'Agostino, Bonett-Seier).

This package provides tools to compute polychoric and polyserial correlations by quick "two-step" methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.

This package provides text and label geometries for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.

This package provides a dependency manager for R projects that allows you to manage the R packages your project depends on in an isolated, portable, and reproducible way.

reduceLCS is an implementation of the Reduce-Expand algorithm for LCS. It is a fast program to compute the approximate Longest Commons Subsequence of a set of strings.

Streamlines the interaction with the RCSB Protein Data Bank ('PDB') <https://www.rcsb.org/>. This interface offers an intuitive and powerful tool for searching and retrieving a diverse range of data types from the PDB'. It includes advanced functionalities like BLAST and sequence motif queries. Built upon the existing XML-based API of the PDB', it simplifies the creation of custom requests, thereby enhancing usability and flexibility for researchers.

An integrated solution to perform a series of text mining tasks such as importing and cleaning a corpus, and analyses like terms and documents counts, lexical summary, terms co-occurrences and documents similarity measures, graphs of terms, correspondence analysis and hierarchical clustering. Corpora can be imported from spreadsheet-like files, directories of raw text files, as well as from Dow Jones Factiva', LexisNexis', Europresse and Alceste files.