This package provides some basic linear algebra functionality for sparse matrices. It includes Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.

This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy. It provides estimates for each gene within each sample.

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Data about the bakers, challenges, and ratings for "The Great British Bake Off", from Wikipedia <https://en.wikipedia.org/wiki/The_Great_British_Bake_Off>.

Checks that students have the correct version of R', R packages, RStudio and other dependencies installed, and that the recommended RStudio configuration has been applied.

Estimation of changepoints using an "S-curve" approximation. Formation of confidence intervals for changepoint locations and magnitudes. Both abrupt and gradual changes can be modeled.

This tool performs pairwise correlation analysis and estimate causality. Particularly, it is useful for detecting the metabolites that would be altered by the gut bacteria.

Simulate plasma caffeine concentrations using population pharmacokinetic model described in Lee, Kim, Perera, McLachlan and Bae (2015) <doi:10.1007/s00431-015-2581-x>.

Implementations of recent complex-valued wavelet spectral procedures for analysis of irregularly sampled signals, see Hamilton et al (2018) <doi:10.1080/00401706.2017.1281846>.

Summarizes data frames by calculating various statistics including central tendency, dispersion, shape, and normality diagnostics. Handles numeric, character, and factor columns with NA-aware computations.

This package provides a function for plotting maps of agricultural field experiments that are laid out in grids. See Ryder (1981) <doi:10.1017/S0014479700011601>.

This package provides a wrapper of different standard estimation methods for gravity models. This package provides estimation methods for log-log models and multiplicative models.

This package provides a ggplot2 extension that provides tools for automatically creating scales to focus on subgroups of the data plotted without losing other information.

This package provides functions to view files in raw binary form like in a hex editor. Additional functions to specify and read arbitrary binary formats.

Using the MDL principle, it is possible to estimate parameters for a histogram-like model. The package contains the implementation of such an estimation method.

API wrapper that contains functions to retrieve data from the IsoMemo partnership databases. Web services for API: <https://isomemodb.com/api/v1/iso-data>.

Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models.

Fit Spatial Econometrics models using Bayesian model averaging on models fitted with INLA. The INLA package can be obtained from <https://www.r-inla.org>.

Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC; Dimitris Rizopoulos (2016) <doi:10.18637/jss.v072.i07>.

Evaluate specific panels in different aspects: i) Simulation tools related to pedigree researches; ii) calculation for systemic effectiveness indicators, such as probability of exclusion (PE).

Fast implementation of Nadaraya-Watson kernel regression for either univariate or multivariate responses, with one or more bandwidths. K-fold cross-validation is also performed.

This package provides a simple progress bar showing estimated remaining time. Multiple forecast methods and user defined forecast method for the remaining time are supported.

Implementation of parametric and semiparametric mixture cure models based on existing R packages. See details of the models in Peng and Yu (2020) <ISBN: 9780367145576>.

Conducts and simulates the MABOUST design, including making interim decisions to stop a treatment for inferiority or stop the trial early for superiority or equivalency.