Identifies the optimal confidence level to represent the results of a set of pairwise tests as suggested by Armstrong and Poirier (2025) <doi:10.1017/pan.2024.24>.

Assesses evidence for Zipf's Law of Abbreviation in animal vocalisation using IDs, note class and note duration. The package also provides a web plot function for visualisation.

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Supports automated Markov chain Monte Carlo for arbitrarily structured correlation matrices. The user supplies data, a correlation matrix in symbolic form, the current state of the chain, a function that computes the log likelihood, and a list of prior distributions. The package's flagship function then carries out a parameter-at-a-time update of all correlation parameters, and returns the new state. The method is presented in Hughes (2023), in preparation.

Package runonce helps automating the saving of long-running code to help running the same code multiple times. If you run some long-running code once, it saves the result in a file on disk. Then, if the result already exists, i.e. if the code has already been run and its output has already been saved, it just reads the result from the stored file instead of running the code again.

The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

This is a package for fast Non-negative Matrix Factorization (NMF) with automatic rank-determination for dimension reduction of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and similar.

This package performs score test using saddlepoint approximation to estimate the null distribution. It also prepares summary statistics for meta-analysis and performs meta-analysis to combine multiple association results.

This package provides auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

This package provides ð §° The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time checked queries without a DSL. Supports PostgreSQL, MySQL, and SQLite.

Grafts the extinct bird species from the Avotrex database (Sayol et al., in review) on to the BirdTree phylogenies <https://birdtree.org>, using a set of different commands.

Anytime-valid sequential estimation of the p-value of a test calibrated by Monte-Carlo simulation, as described in Stoepker & Castro (2024) <doi:10.48550/arXiv.2409.18908>.

R interface for RAPIDS cuML (<https://github.com/rapidsai/cuml>), a suite of GPU-accelerated machine learning libraries powered by CUDA (<https://en.wikipedia.org/wiki/CUDA>).

This package contains the basic functions to apply the unified framework for partitioning the drivers of stability of ecological communities. Segrestin et al. (2024) <doi:10.1111/geb.13828>.

Domain mean estimation with monotonicity or block monotone constraints. See Xu X, Meyer MC and Opsomer JD (2021)<doi:10.1016/j.jspi.2021.02.004> for more details.

Systematically Run R checks against multiple packages. Checks are run in parallel with strategies to minimize dependency installation. Provides out of the box interface for running reverse dependency check.

This package provides a domain-specific language for specifying translating recursions into dynamic-programming algorithms. See <https://en.wikipedia.org/wiki/Dynamic_programming> for a description of dynamic programming.

Non-iterative estimator for the cumulative distribution of a doubly truncated variable. de Uña-à lvarez J. (2018) <doi:10.1007/978-3-319-73848-2_37>.

Second and backward-incompatible version of R package eodhd <https://eodhd.com/>, extended with a cache and quota system, also offering functions for cleaning and aggregating the financial data.

This package provides methods to solve Fuzzy Linear Programming Problems with fuzzy constraints (following different approaches proposed by Verdegay, Zimmermann, Werners and Tanaka), fuzzy costs, and fuzzy technological matrix.

The FastPCS algorithm of Vakili and Schmitt (2014) <doi:10.1016/j.csda.2013.07.021> for robust estimation of multivariate location and scatter and multivariate outliers detection.

Retrieve datasets from the Global Data Lab website <https://globaldatalab.org> directly into R data frames. Functions are provided to reference available options (indicators, levels, countries, regions) as well.

This is a GitHub API wrapper for R. <https://docs.github.com/en/rest> It uses the gh package but has things wrapped up for convenient use cases.