Extract features and classify documents with noisy labels given by document-meta data or keyword matching Watanabe & Zhou (2020) <doi:10.1177/0894439320907027>.

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

This package provides an implementation of chunked, compressed, N-dimensional arrays for R, Zarr specification version 2 (2024) <doi:10.5281/zenodo.11320255>.

Ribotaper is a method for defining translated open reading frames (ORFs) using ribosome profiling (ribo-seq) data. This package provides the Ribotaper pipeline.

This package provides a computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

This package provides a fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.

This package provides tools for the calibration of penalized criteria for model selection. The calibration methods available are based on the slope heuristics.

The package provides estimators of the mode of univariate unimodal (and sometimes multimodal) data and values of the modes of usual probability distributions.

This package provides Pure Rust implementation of the NIST P-521 (a.k.a. secp521r1) elliptic curve as defined in SP 800-186.

This crate provides a number of conversion traits with more specific semantics than those provided by as or From/Into.

Low- and high-level wrappers for Gemma's RESTful API. They enable access to curated expression and differential expression data from over 10,000 published studies. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles.

RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.

R on FHIR is an easy to use wrapper around the HL7 FHIR REST API (STU 3 and R4). It provides tools to easily read and search resources on a FHIR server and brings the results into the R environment. R on FHIR is based on the FhirClient of the official HL7 FHIR .NET API', also made by Firely.

An implementation of the WOFOST ("World Food Studies") crop growth model. WOFOST is a dynamic simulation model that uses daily weather data, and crop, soil and management parameters to simulate crop growth and development. See De Wit et al. (2019) <doi:10.1016/j.agsy.2018.06.018> for a recent review of the history and use of the model.

This package was previously an R wrapper of the ARPACK library, and now a shell of the R package RSpectra, an R interface to the Spectra library for solving large scale eigenvalue/vector problems. The current version of rARPACK simply imports and exports the functions provided by RSpectra. New users of rARPACK are advised to switch to the RSpectra package.

Flog reports the most tortured code in an easy to read pain report. The higher the score, the more pain the code is in.

This package provides a simple client for the Amazon Web Services ('AWS') Identity and Access Management ('IAM') API <https://aws.amazon.com/iam/>.

An unofficial companion to the textbook "Applied Regression Analysis" by N.R. Draper and H. Smith (3rd Ed., 1998) including all the accompanying datasets.

Implementations of recent complex-valued wavelet shrinkage procedures for smoothing irregularly sampled signals, see Hamilton et al (2018) <doi:10.1080/00401706.2017.1281846>.

This package creates define.xml documents used for regulatory submissions based on spreadsheet metadata. Can also help create metadata and generate HTML data explorer.

Perform a test of a simple null hypothesis about a directly standardized rate and obtain the matching confidence interval using a choice of methods.

Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) <doi:10.1093/bioinformatics/bty926>.

Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.

This package provides a collection of functions to manage, to investigate and to analyze data sets of financial assets from different points of view.