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r-irtawsi 0.4.1
Propagated dependencies: r-writexl@1.5.4 r-wrightmap@1.4 r-shinywidgets@0.9.0 r-shinycssloaders@1.1.0 r-shiny@1.10.0 r-rmarkdown@2.29 r-readxl@1.4.5 r-psych@2.5.3 r-mirtcat@1.14 r-mirt@1.44.0 r-gt@1.0.0 r-dt@0.33 r-diagram@1.6.5 r-bs4dash@2.3.4
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://github.com/SusantoHP/irtawsi
Licenses: GPL 3+
Synopsis: Items Response Theory Analysis with Steps and Interpretation
Description:

Dichotomous and polytomous data analysis and their scoring using the unidimensional Item Response Theory model (Chalmers (2012) <doi:10.18637/jss.v048.i06>) with user-friendly graphic User Interface. Suitable for beginners who are learning item response theory.

r-mcemglm 1.1.3
Propagated dependencies: r-trust@0.1-8 r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=mcemGLM
Licenses: GPL 2+
Synopsis: Maximum Likelihood Estimation for Generalized Linear Mixed Models
Description:

Maximum likelihood estimation for generalized linear mixed models via Monte Carlo EM. For a description of the algorithm see Brian S. Caffo, Wolfgang Jank and Galin L. Jones (2005) <DOI:10.1111/j.1467-9868.2005.00499.x>.

r-nisrarr 0.1.1
Propagated dependencies: r-vctrs@0.6.5 r-tibble@3.2.1 r-stringr@1.5.1 r-rlang@1.1.6 r-rjstat@0.4.3 r-purrr@1.0.4 r-pillar@1.10.2 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-httr2@1.1.2 r-glue@1.8.0 r-dplyr@1.1.4 r-cachem@1.1.0
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/MarkPaulin/nisrarr
Licenses: Expat
Synopsis: Download Data from the NISRA Data Portal
Description:

Download data from the Northern Ireland Statistics and Research Agency (NISRA) data portal, accessed at <https://data.nisra.gov.uk>. NISRA is a government agency and the principal source of official statistics and social research on Northern Ireland.

r-numbers 0.8-5
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://cran.r-project.org/package=numbers
Licenses: GPL 3+
Synopsis: Number-Theoretic Functions
Description:

This package provides number-theoretic functions for factorization, prime numbers, twin primes, primitive roots, modular logarithm and inverses, extended GCD, Farey series and continued fractions. Includes Legendre and Jacobi symbols, some divisor functions, Euler's Phi function, etc.

r-otargen 2.0.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-magrittr@2.0.3 r-jsonlite@2.0.0 r-httr@1.4.7 r-ghql@0.1.0 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://amirfeizi.github.io/otargen/
Licenses: Expat
Synopsis: Access Open Target
Description:

Interact seamlessly with Open Target GraphQL endpoint to query and retrieve tidy data tables, facilitating the analysis of gene, disease, drug, and genetic data. For more information about the Open Target API (<https://platform.opentargets.org/api>).

r-ordpens 1.1.0
Propagated dependencies: r-rlrsim@3.1-8 r-quadprog@1.5-8 r-ordinalnet@2.13 r-mgcv@1.9-3 r-grplasso@0.4-7 r-glmpath@0.98
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ordPens
Licenses: GPL 2
Synopsis: Selection, Fusion, Smoothing and Principal Components Analysis for Ordinal Variables
Description:

Selection, fusion, and/or smoothing of ordinally scaled independent variables using a group lasso, fused lasso or generalized ridge penalty, as well as non-linear principal components analysis for ordinal variables using a second-order difference/smoothing penalty.

r-ormplot 0.3.6
Propagated dependencies: r-rms@8.0-0 r-gtable@0.3.6 r-ggplot2@3.5.2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://doi.org/10.1186/s12889-019-8072-7
Licenses: Expat
Synopsis: Advanced Plotting of Ordinal Regression Models
Description:

An extension to the Regression Modeling Strategies package that facilitates plotting ordinal regression model predictions together with confidence intervals for each dependent variable level. It also adds a functionality to plot the model summary as a modifiable object.

r-polyreg 0.8.0
Propagated dependencies: r-nnet@7.3-20
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/matloff/polyreg
Licenses: GPL 2+
Synopsis: Polynomial Regression
Description:

Automate formation and evaluation of polynomial regression models. The motivation for this package is described in Polynomial Regression As an Alternative to Neural Nets by Xi Cheng, Bohdan Khomtchouk, Norman Matloff, and Pete Mohanty (<arXiv:1806.06850>).

r-precipe 3.0.3
Dependencies: proj@9.3.1 gdal@3.8.2
Propagated dependencies: r-twc@0.0.2 r-scales@1.4.0 r-raster@3.6-32 r-openair@2.18-2 r-magrittr@2.0.3 r-ggpubr@0.6.0 r-ggplot2@3.5.2 r-data-table@1.17.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/MiRoVaGo/pRecipe
Licenses: GPL 3
Synopsis: Precipitation R Recipes
Description:

An open-access tool/framework to download, validate, visualize, and analyze multi-source precipitation data. More information and an example of implementation can be found in Vargas Godoy and Markonis (2023, <doi:10.1016/j.envsoft.2023.105711>).

r-santoku 1.0.0
Propagated dependencies: r-vctrs@0.6.5 r-rlang@1.1.6 r-rcpp@1.0.14 r-lifecycle@1.0.4 r-glue@1.8.0 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/hughjonesd/santoku
Licenses: Expat
Synopsis: Versatile Cutting Tool
Description:

This package provides a tool for cutting data into intervals. Allows singleton intervals. Always includes the whole range of data by default. Flexible labelling. Convenience functions for cutting by quantiles etc. Handles dates, times, units and other vectors.

r-signacx 2.2.5
Propagated dependencies: r-seurat@5.3.0 r-rjsonio@2.0.0 r-rcolorbrewer@1.1-3 r-pbmcapply@1.5.1 r-neuralnet@1.44.2 r-matrix@1.7-3 r-lme4@1.1-37 r-jsonlite@2.0.0 r-igraph@2.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/mathewchamberlain/SignacX
Licenses: GPL 3
Synopsis: Cell Type Identification and Discovery from Single Cell Gene Expression Data
Description:

An implementation of neural networks trained with flow-sorted gene expression data to classify cellular phenotypes in single cell RNA-sequencing data. See Chamberlain M et al. (2021) <doi:10.1101/2021.02.01.429207> for more details.

r-superml 0.5.7
Propagated dependencies: r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14 r-r6@2.6.1 r-metrics@0.1.4 r-data-table@1.17.4 r-bh@1.87.0-1 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/saraswatmks/superml
Licenses: GPL 3 FSDG-compatible
Synopsis: Build Machine Learning Models Like Using Python's Scikit-Learn Library in R
Description:

The idea is to provide a standard interface to users who use both R and Python for building machine learning models. This package provides a scikit-learn's fit, predict interface to train machine learning models in R.

r-swtools 1.1.0
Propagated dependencies: r-zoo@1.8-14 r-tidyr@1.3.1 r-tibble@3.2.1 r-stringr@1.5.1 r-sf@1.0-21 r-segmented@2.1-4 r-rmarkdown@2.29 r-rlang@1.1.6 r-readr@2.1.5 r-prettymapr@0.2.5 r-magrittr@2.0.3 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-hydrotsm@0.7-0.1 r-httr@1.4.7 r-ggspatial@1.1.9 r-ggpubr@0.6.0 r-ggplot2@3.5.2 r-forcats@1.0.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/matt-s-gibbs/SWTools
Licenses: GPL 3
Synopsis: Helper Tools for Australian Hydrologists
Description:

This package provides functions to speed up work flow for hydrological analysis. Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).

r-spsutil 0.2.2
Propagated dependencies: r-stringr@1.5.1 r-r6@2.6.1 r-magrittr@2.0.3 r-httr@1.4.7 r-glue@1.8.0 r-crayon@1.5.3 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/lz100/spsUtil
Licenses: GPL 3+
Synopsis: 'systemPipeShiny' Utility Functions
Description:

The systemPipeShiny (SPS) framework comes with many useful utility functions. However, installing the whole framework is heavy and takes some time. If you like only a few useful utility functions from SPS, install this package is enough.

r-saemspe 1.4
Propagated dependencies: r-smallarea@0.1 r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14 r-matrix@1.7-3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=saeMSPE
Licenses: GPL 2+
Synopsis: Computing MSPE Estimates in Small Area Estimation
Description:

Compute various common mean squared predictive error (MSPE) estimators, as well as several existing variance component predictors as a byproduct, for FH model (Fay and Herriot, 1979) and NER model (Battese et al., 1988) in small area estimation.

r-textrar 0.8.0
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/matutosi/textrar
Licenses: Expat
Synopsis: Interface to 'TexTra' from R
Description:

This package provides a wrapper for the TexTra API <https://mt-auto-minhon-mlt.ucri.jgn-x.jp/>, a web service for translating texts between different languages. TexTra API account is required to use the service.

r-tornado 0.1.3
Propagated dependencies: r-survival@3.8-3 r-scales@1.4.0 r-rlang@1.1.6 r-gridextra@2.3 r-ggplot2@3.5.2 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/bertcarnell/tornado
Licenses: GPL 3
Synopsis: Plots for Model Sensitivity and Variable Importance
Description:

Draws tornado plots for model sensitivity to univariate changes. Implements methods for many modeling methods including linear models, generalized linear models, survival regression models, and arbitrary machine learning models in the caret package. Also draws variable importance plots.

r-seqbias 1.50.0
Propagated dependencies: r-biostrings@2.76.0 r-genomicranges@1.60.0 r-rhtslib@3.4.0 r-zlibbioc@1.54.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/seqbias/
Licenses: LGPL 3
Synopsis: Estimation of per-position bias in high-throughput sequencing data
Description:

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

r-annaffy 1.80.0
Propagated dependencies: r-annotationdbi@1.70.0 r-biobase@2.68.0 r-biocmanager@1.30.25 r-dbi@1.2.3 r-go-db@3.21.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/annaffy/
Licenses: LGPL 2.1+
Synopsis: Annotation tools for Affymetrix biological metadata
Description:

This package provides functions for handling data from Bioconductor Affymetrix annotation data packages. It produces compact HTML and text reports including experimental data and URL links to many online databases. It allows searching of biological metadata using various criteria.

r-bpcells 0.3.0
Dependencies: hdf5@1.14.6 zlib@1.3
Propagated dependencies: r-dplyr@1.1.4 r-ggplot2@3.5.2 r-ggrepel@0.9.6 r-hexbin@1.28.5 r-lifecycle@1.0.4 r-magrittr@2.0.3 r-matrix@1.7-3 r-patchwork@1.3.0 r-rcolorbrewer@1.1-3 r-rcpp@1.0.14 r-rcppeigen@0.3.4.0.2 r-readr@2.1.5 r-rlang@1.1.6 r-scales@1.4.0 r-scattermore@1.2 r-stringr@1.5.1 r-tibble@3.2.1 r-tidyr@1.3.1 r-vctrs@0.6.5 r-genomicranges@1.60.0 r-igraph@2.1.4 r-iranges@2.42.0 r-matrixstats@1.5.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/bnprks/BPCells
Licenses: ASL 2.0 Expat
Synopsis: Single cell counts matrices to PCA
Description:

This is a package providing efficient operations for single cell ATAC-seq fragments and RNA counts matrices. It is interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.

r-catools 1.18.3
Propagated dependencies: r-bitops@1.0-9
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/caTools
Licenses: GPL 3+
Synopsis: Various tools including functions for moving window statistics
Description:

This package contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.

r-pvclust 2.2-0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/shimo-lab/pvclust
Licenses: GPL 2+
Synopsis: Hierarchical clustering with P-values via multiscale bootstrap resampling
Description:

This package provides an implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides an AU (approximately unbiased) P-value as well as a BP (bootstrap probability) value for each cluster in a dendrogram.

r-biclust 2.0.3.1
Propagated dependencies: r-additivitytests@1.1-4.2 r-colorspace@2.1-1 r-flexclust@1.5.0 r-ggplot2@3.5.2 r-lattice@0.22-7 r-mass@7.3-65 r-tidyr@1.3.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/biclust/
Licenses: GPL 3
Synopsis: BiCluster algorithms
Description:

The main function biclust() provides several algorithms to find biclusters in two-dimensional data, spectral, plaid model, xmotifs, and bimax. In addition, the package provides methods for data preprocessing (normalization and discretization), visualization, and validation of bicluster solutions.

r-deoptim 2.2-8
Propagated dependencies: r-parallelly@1.44.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/ArdiaD/DEoptim
Licenses: GPL 2+
Synopsis: Global optimization by differential evolution
Description:

This package implements the Differential Evolution algorithm. This algorithm is used for the global optimization of a real-valued function of a real-valued parameter vector. The implementation of DifferentialEvolution in DEoptim interfaces with C code for efficiency.

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