Implementation of a KL-based scoring rule to assess the quality of different missing value imputations in the broad sense as introduced in Michel et al. (2021) <arXiv:2106.03742>.

It provides in-place operators for R that are equivalent to +=', -=', *=', /= in C++. Those can be applied on integer|double vectors|matrices. You have also access to sweep operations (in-place).

This package provides flexible but lightweight logging facilities for R scripts. Supports priority levels for logs and messages, flagging messages, capturing script output, switching logs, and logging to files or connections.

Assessment of inconsistency in meta-analysis by calculating the Decision Inconsistency index (DI) and the Across-Studies Inconsistency (ASI) index. These indices quantify inconsistency taking into account outcome-level decision thresholds.

This package provides a minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections. See Brown (2016) <doi:10.32614/RJ-2016-005>.

Routines for assessing multivariate normality. Implements three Wald's type chi-squared tests; non-parametric Anderson-Darling and Cramer-von Mises tests; Doornik-Hansen test, Royston test and Henze-Zirkler test.

This package provides tools for converting Open-Source Tools for Training Resources (OTTR) courses into Leanpub or Coursera courses. ottrpal is for use with the OTTR Template repository to create courses.

Allows code to be run only once on a given computer, using lockfiles. Typical use cases include startup messages shown only when a package is loaded for the very first time.

Permute treatment labels for taxa and environmental gradients to generate an empirical distribution of change points. This is an extension for the TITAN2 package <https://cran.r-project.org/package=TITAN2>.

This package provides a spatial covariate-augmented overdispersed Poisson factor model is proposed to perform efficient latent representation learning method for high-dimensional large-scale spatial count data with additional covariates.

Data processing and visualizations for rodent vocalizations exported from DeepSqueak'. These functions are compatible with the SqueakR Shiny Dashboard, which can be used to visualize experimental results and analyses.

Unofficial client for Sentry <https://sentry.io>, a self-hosted or cloud-based error-monitoring service. It will inform about errors in real-time, and includes integration with the Plumber package.

Character vector to numerical translation in Euros from Spanish spelled monetary quantities. Reverse translation from integer to Spanish. Upper limit is up to the millions range. Geocoding via Cadastral web site.

This package provides a set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example to export to a PLINK set.

The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.

Implementation of the variable banding procedure for modeling local dependence and estimating precision matrices that is introduced in Yu & Bien (2016) and is available at <https://arxiv.org/abs/1604.07451>.

Forecasting univariate time series with Variational Mode Decomposition (VMD) based time delay neural network models.For method details see Konstantin, D.and Dominique, Z. (2014). <doi:10.1109/TSP.2013.2288675>.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was AG\_probe\_tab.

This package provides panels summarising data points in hexagonal bins for `iSEE`. It is part of `iSEEu`, the iSEE universe of panels that extend the `iSEE` package.

This package helps users to work with TF metadata from various sources. Significant catalogs of TFs and classifications thereof are made available. Tools for working with motif scans are also provided.

Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.

This package provides a function to infer pathway activity from gene expression. It contains the linear model inferred in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".

This package provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.