This package provides ggplot2 geoms that allow groups of data points to be outlined or highlighted for emphasis. This is particularly useful when working with dense datasets that are prone to overplotting.

Multivariate Expectation-Maximization (EM) based imputation framework that offers several different algorithms. These include regularisation methods like Lasso and Ridge regression, tree-based models and dimensionality reduction methods like PCA and PLS.

This package contains data sets, programmes and illustrations discussed in the book, "Introduction to Probability, Statistics and R: Foundations for Data-Based Sciences." Sahu (2024, isbn:9783031378645) describes the methods in detail.

Various functions and a Shiny app to enrich the results of Multiple Correspondence Analysis with interpretive axes and planes (see Moschidis, Markos, and Thanopoulos, 2022; <doi:10.1108/ACI-07-2022-0191>).

This package provides a graph proposed by Rosenbaum is useful for checking some properties of various sorts of latent scale, this program generates commands to obtain the graph using dot from graphviz'.

Fit multi-level models with possibly correlated random effects using Markov Chain Monte Carlo simulation. Such models allow smoothing over space and time and are useful in, for example, small area estimation.

Computing metabolite set enrichment analysis (MSEA) (Yamamoto, H. et al. (2014) <doi:10.1186/1471-2105-15-51>) and single sample enrichment analysis (SSEA) (Yamamoto, H. (2023) <doi:10.51094/jxiv.262>).

This package provides a simple n-gram (contiguous sequences of n items from a given sequence of text) tokenizer to be used with the tm package with no rJava'/'RWeka dependency.

Given a certain coverage level, obtains simultaneous confidence bands for the survival and cumulative hazard functions such that the area between is minimized. Produces an approximate solution based on local time arguments.

Estimates win ratio or Mann-Whitney parameter for two group comparisons using ordered composite endpoints with right censoring as described in Follmann, Fay, Hamasaki, and Evans (2020)<doi:10.1002/sim.7890>.

This wrapper houses PathLit API endpoints for R. The usage of these endpoints require the use of an API key which can be obtained at <https://www.pathlit.io/docs/cli/>.

Computes likelihood ratio test (LRT) p-values for free parameters in a structural equation model. Currently supports models fitted by the lavaan package by Rosseel (2012) <doi:10.18637/jss.v048.i02>.

Routines for computing different types of linear estimators, based on instrumental variables (IVs), including the semi-parametric Stein-like (SPS) estimator, originally introduced by Judge and Mittelhammer (2004) <DOI:10.1198/016214504000000430>.

The complete scripts from the American version of the Office television show in tibble format. Use this package to analyze and have fun with text from the best series of all time.

Create scaled ggplot representations of playing surfaces. Playing surfaces are drawn pursuant to rule-book specifications. This package should be used as a baseline plot for displaying any type of tracking data.

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.

An interactive document on the topic of variance analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://predanalyticssessions1.shinyapps.io/chisquareVarianceTest/>.

R binding for libfswatch', a file system monitoring library. Watch files, or directories recursively, for changes in the background. Log activity, or run an R function every time a change event occurs.

The XML-RPC is a remote procedure call protocol based on XML'. The xmlrpc2 package is inspired by the XMLRPC package but uses the curl and xml2 packages instead RCurl and XML'.

Write YAML front matter for R Markdown and related documents. Work with YAML objects more naturally and write the resulting YAML to your clipboard or to YAML files related to your project.

This package provides a novel approach utilizing a homogeneous hidden Markov model. And effectively model untransformed beta values. To identify DMCs while considering the spatial. Correlation of the adjacent CpG sites.

This package provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. It also provides some helper functions to assist development of other packages.

This package defines data structures for linkage disequilibrium (LD) measures in populations. Its purpose is to simplify handling of existing population-level data for the purpose of flexibly defining LD blocks.

The fstlib library provides multithreaded serialization of compressed data frames using the fst format. The fst format allows for random access of stored data and compression with the LZ4 and ZSTD compressors.