Calculates rainfall erosivity from timestamped precipitation records. The package identifies rainfall events, calculates continuous rolling rainfall intensities, rainfall kinetic energy, and event EI30 erosivity, aggregates contributing event erosivity to monthly and yearly totals, and calculates multi-year mean monthly and annual rainfall erosivity. Storm separation, event omission criteria, intensity durations, and rainfall kinetic-energy equations are configurable. Rainfall kinetic energy can be calculated using the formulations of Brown and Foster (1987) <doi:10.13031/2013.31957>, McGregor et al. (1995) <doi:10.13031/2013.27921>, and Laws and Parsons (1943) <doi:10.1029/TR024i002p00452>.

This package provides tamper-evident, hash-chained audit logging for analytical applications. Every log entry is linked via an SHA-256 hash to its predecessor, making insertions, deletions, and modifications detectable. Covers user attribution, timestamp integrity, mandatory reason capture, chain verification, structured export, and shiny session instrumentation. For more details see <https://reprostats.org/regulog/>. Suitable for any context where accountability and traceability matter: regulated environments (21 CFR Part 11, EU Annex 11), internal tooling, data pipelines, and multi-user shiny applications. Ships with optional qualification scripts (IQ, OQ, PQ) for use in validated computerised systems.

rsnapshot is a file system snapshot utility based on rsync. rsnapshot makes it easy to make periodic snapshots of local machines, and remote machines over SSH. To reduce the disk space required for each backup, rsnapshot uses hard links to deduplicate identical files.

This is a package for Differential Expression Analysis of RNA-seq data. It features a variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with repeated or longitudinal data.

This package provides a %<-% operator to perform multiple, unpacking, and destructuring assignment in R. The operator unpacks the right-hand side of an assignment into multiple values and assigns these values to variables on the left-hand side of the assignment.

This package provides functions to export graphics drawn with package grid to SVG format. Extra functions provide access to SVG features that are not available in standard R graphics, such as hyperlinks, animation, filters, masks, clipping paths, and gradient and pattern fills.

The package converts the input in any one of character, integer, numeric, factor, or an ordered type into POSIXct (or Date) objects, using one of a number of predefined formats, and relying on Boost facilities for date and time parsing.

The analysis and inference of faunal remains recovered from archaeological sites concerns the field of zooarchaeology. The zooaRch package provides analytical tools to make inferences on zooarchaeological data. Functions in this package allow users to read, manipulate, visualize, and analyze zooarchaeological data.

This package provides a simple and light-weight API for memory profiling of R expressions. The profiling is built on top of R's built-in memory profiler utils::Rprofmem(), which records every memory allocation done by R (also native code).

KPeg is a simple PEG library for Ruby. It provides an API as well as native grammar to build the grammar. KPeg supports direct left recursion of rules via the OMeta memoization technique.

This package provides a package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

This package provides a series of statistical models using count generating distributions for background modelling, feature and sample QC, normalization and differential expression analysis on GeoMx RNA data. The application of these methods are demonstrated by example data analysis vignette.

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Utility package to facilitate integration and analysis of EBI MGnify data in R. The package can be used to import microbial data for instance into TreeSummarizedExperiment (TreeSE). In TreeSE format, the data is directly compatible with miaverse framework.

Bindings to libarchive <http://www.libarchive.org> the Multi-format archive and compression library. Offers R connections and direct extraction for many archive formats including tar', ZIP', 7-zip', RAR', CAB and compression formats including gzip', bzip2', compress', lzma and xz'.

Smoothed lexis diagrams with Bayesian method specifically tailored to cancer incidence data. Providing to calculating slope and constructing credible interval. LC Chien et al. (2015) <doi:10.1080/01621459.2015.1042106>. LH Chien et al. (2017) <doi:10.1002/cam4.1102>.

Perform the Benford's Analysis to a data set in order to evaluate if it contains human fabricated data. For more details on the method see Moreau, 2021, Model Assist. Statist. Appl., 16 (2021) 73â 79. <doi:10.3233/MAS-210517>.

Bootstrap methods to assess accuracy and stability of estimated network structures and centrality indices <doi:10.3758/s13428-017-0862-1>. Allows for flexible specification of any undirected network estimation procedure in R, and offers default sets for various estimation routines.

This package contains functions to estimate the Correlation-Adjusted Regression Survival (CARS) Scores. The method is described in Welchowski, T. and Zuber, V. and Schmid, M., (2018), Correlation-Adjusted Regression Survival Scores for High-Dimensional Variable Selection, <arXiv:1802.08178>.

Computes community climate statistics for volume and mismatch using species climate niches either unscaled or scaled relative to a regional species pool. These statistics can be used to describe biogeographic patterns and infer community assembly processes. Includes a vignette outlining usage.

Accelerate Bayesian analytics workflows in R through interactive modelling, visualization, and inference. Define probabilistic graphical models using directed acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians, and programmers. This package relies on interfacing with the numpyro python package.

Implementation of the age-period-cohort models for the claim development presented in the manuscript Replicating and extending chain-ladder via an age-period-cohort structure on the claim development in a run-off triangle <doi:10.1080/10920277.2025.2496725>.

Wraps common FFmpeg <https://ffmpeg.org/> filter_complex patterns (overlay, chromakey, concat, scale, vstack) into clean R functions for video compositing, and lowers an OpenTimelineIO <https://github.com/AcademySoftwareFoundation/OpenTimelineIO> timeline (via the rotio package) to a rendered video.

This package implements correlation structures for symmetric relational data (e.g. pairwise distances and dissimilarities) that interface with models using nlme'-style correlation structures. The maximum likelihood population effects method is described by Clarke et al. (2002) <doi:10.1198/108571102320>.