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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-metabcombiner 1.20.0
Propagated dependencies: r-tidyr@1.3.1 r-s4vectors@0.46.0 r-rlang@1.1.6 r-mgcv@1.9-3 r-matrixstats@1.5.0 r-dplyr@1.1.4 r-caret@7.0-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/metabCombiner
Licenses: GPL 3
Synopsis: Method for Combining LC-MS Metabolomics Feature Measurements
Description:

This package aligns LC-HRMS metabolomics datasets acquired from biologically similar specimens analyzed under similar, but not necessarily identical, conditions. Peak-picked and simply aligned metabolomics feature tables (consisting of m/z, rt, and per-sample abundance measurements, plus optional identifiers & adduct annotations) are accepted as input. The package outputs a combined table of feature pair alignments, organized into groups of similar m/z, and ranked by a similarity score. Input tables are assumed to be acquired using similar (but not necessarily identical) analytical methods.

r-mgu74bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type mgu74b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\_probe\_tab.

r-mlseq 2.28.0
Propagated dependencies: r-xtable@1.8-4 r-venndiagram@1.7.3 r-testthat@3.2.3 r-summarizedexperiment@1.38.1 r-sseq@1.48.0 r-plyr@1.8.9 r-pamr@1.57 r-limma@3.64.1 r-ggplot2@3.5.2 r-foreach@1.5.2 r-edger@4.6.2 r-deseq2@1.48.1 r-caret@7.0-1 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MLSeq
Licenses: FSDG-compatible
Synopsis: Machine Learning Interface for RNA-Seq Data
Description:

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.

r-m20kcod-db 3.4.0
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/m20kcod.db
Licenses: Artistic License 2.0
Synopsis: Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)
Description:

Codelink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod) assembled using data from public repositories.

r-mouse4302cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302cdf
Licenses: LGPL 2.0+
Synopsis: mouse4302cdf
Description:

This package provides a package containing an environment representing the Mouse430_2.cdf file.

r-mspms 1.2.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-summarizedexperiment@1.38.1 r-stringr@1.5.1 r-rstatix@0.7.2 r-rlang@1.1.6 r-readr@2.1.5 r-qfeatures@1.18.0 r-purrr@1.0.4 r-magrittr@2.0.3 r-limma@3.64.1 r-heatmaply@1.5.0 r-ggseqlogo@0.2 r-ggpubr@0.6.0 r-ggplot2@3.5.2 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/baynec2/mspms
Licenses: Expat
Synopsis: Tools for the analysis of MSP-MS data
Description:

This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.

r-moe430bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430bprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type moe430b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MOE430B\_probe\_tab.

r-mimager 1.34.0
Propagated dependencies: r-scales@1.4.0 r-s4vectors@0.46.0 r-preprocesscore@1.70.0 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-gtable@0.3.6 r-dbi@1.2.3 r-biocgenerics@0.54.0 r-biobase@2.68.0 r-affyplm@1.84.0 r-affy@1.86.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/aaronwolen/mimager
Licenses: Expat
Synopsis: mimager: The Microarray Imager
Description:

Easily visualize and inspect microarrays for spatial artifacts.

r-mouse4302frmavecs 1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302frmavecs
Licenses: GPL 2+
Synopsis: Vectors used by frma for microarrays of type mouse4302
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-mbpcr 1.64.0
Propagated dependencies: r-oligoclasses@1.70.0 r-gwastools@1.54.0 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://www.idsia.ch/~paola/mBPCR
Licenses: GPL 2+
Synopsis: Bayesian Piecewise Constant Regression for DNA copy number estimation
Description:

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

r-mirna10probe 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mirna10probe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type mirna10
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was miRNA-1\_0\_probe\_tab.

r-mu15v1-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mu15v1.db
Licenses: Artistic License 2.0
Synopsis: FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)
Description:

FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1) assembled using data from public repositories.

r-metagene2 1.26.0
Propagated dependencies: r-rtracklayer@1.68.0 r-rsamtools@2.24.0 r-reshape2@1.4.4 r-r6@2.6.1 r-purrr@1.0.4 r-magrittr@2.0.3 r-iranges@2.42.0 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-genomicalignments@1.44.0 r-genomeinfodb@1.44.0 r-dplyr@1.1.4 r-data-table@1.17.4 r-biocparallel@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ArnaudDroitLab/metagene2
Licenses: Artistic License 2.0
Synopsis: package to produce metagene plots
Description:

This package produces metagene plots to compare coverages of sequencing experiments at selected groups of genomic regions. It can be used for such analyses as assessing the binding of DNA-interacting proteins at promoter regions or surveying antisense transcription over the length of a gene. The metagene2 package can manage all aspects of the analysis, from normalization of coverages to plot facetting according to experimental metadata. Bootstraping analysis is used to provide confidence intervals of per-sample mean coverages.

r-mirna102xgaincdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mirna102xgaincdf
Licenses: LGPL 2.0+
Synopsis: mirna102xgaincdf
Description:

This package provides a package containing an environment representing the miRNA-1_0_2Xgain.CDF file.

r-micsqtl 1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MICSQTL
Licenses: GPL 3
Synopsis: MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)
Description:

Our pipeline, MICSQTL, utilizes scRNA-seq reference and bulk transcriptomes to estimate cellular composition in the matched bulk proteomes. The expression of genes and proteins at either bulk level or cell type level can be integrated by Angle-based Joint and Individual Variation Explained (AJIVE) framework. Meanwhile, MICSQTL can perform cell-type-specic quantitative trait loci (QTL) mapping to proteins or transcripts based on the input of bulk expression data and the estimated cellular composition per molecule type, without the need for single cell sequencing. We use matched transcriptome-proteome from human brain frontal cortex tissue samples to demonstrate the input and output of our tool.

r-microbiomedatasets 1.18.0
Propagated dependencies: r-treesummarizedexperiment@2.16.1 r-summarizedexperiment@1.38.1 r-multiassayexperiment@1.34.0 r-experimenthub@2.16.0 r-biostrings@2.76.0 r-biocgenerics@0.54.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeDataSets
Licenses: CC0
Synopsis: Experiment Hub based microbiome datasets
Description:

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

r-mgu74aprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74aprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type mgu74a
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74A\_probe\_tab.

r-multistateqtl 2.2.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dunstone-a/multistateQTL
Licenses: GPL 3
Synopsis: Toolkit for the analysis of multi-state QTL data
Description:

This package provides a collection of tools for doing various analyses of multi-state QTL data, with a focus on visualization and interpretation. The package multistateQTL contains functions which can remove or impute missing data, identify significant associations, as well as categorise features into global, multi-state or unique. The analysis results are stored in a QTLExperiment object, which is based on the SummarisedExperiment framework.

r-mouse4302-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)
Description:

Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302) assembled using data from public repositories.

r-moexexonprobesetlocation 1.15.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MoExExonProbesetLocation
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type MoEx
Description:

This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.

r-motifpeeker 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/neurogenomics/MotifPeeker
Licenses: GPL 3+
Synopsis: Benchmarking Epigenomic Profiling Methods Using Motif Enrichment
Description:

MotifPeeker is used to compare and analyse datasets from epigenomic profiling methods with motif enrichment as the key benchmark. The package outputs an HTML report consisting of three sections: (1. General Metrics) Overview of peaks-related general metrics for the datasets (FRiP scores, peak widths and motif-summit distances). (2. Known Motif Enrichment Analysis) Statistics for the frequency of user-provided motifs enriched in the datasets. (3. De-Novo Motif Enrichment Analysis) Statistics for the frequency of de-novo discovered motifs enriched in the datasets and compared with known motifs.

r-mu19ksubbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu19ksubbcdf
Licenses: LGPL 2.0+
Synopsis: mu19ksubbcdf
Description:

This package provides a package containing an environment representing the Mu19KsubB.CDF file.

r-mafdb-gnomadex-r2-1-grch38 3.10.0
Propagated dependencies: r-s4vectors@0.46.0 r-iranges@2.42.0 r-genomicscores@2.20.0 r-genomicranges@1.60.0 r-genomeinfodb@1.44.0 r-bsgenome@1.76.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MafDb.gnomADex.r2.1.GRCh38
Licenses: Artistic License 2.0
Synopsis: Minor allele frequency data from gnomAD exomes release 2.1 for GRCh38
Description:

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version GRCh38.

r-mgu74a-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74a.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix MG_U74A Array annotation data (chip mgu74a)
Description:

Affymetrix Affymetrix MG_U74A Array annotation data (chip mgu74a) assembled using data from public repositories.

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