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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mdts 1.30.0
Propagated dependencies: r-stringr@1.5.1 r-rsamtools@2.24.0 r-iranges@2.42.0 r-genomicranges@1.60.0 r-genomicalignments@1.44.0 r-dnacopy@1.82.0 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MDTS
Licenses: Artistic License 2.0
Synopsis: Detection of de novo deletion in targeted sequencing trios
Description:

This package provides a package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

r-mgug4122a-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgug4122a.db
Licenses: Artistic License 2.0
Synopsis: Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)
Description:

Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a) assembled using data from public repositories.

r-mgu74ccdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74ccdf
Licenses: LGPL 2.0+
Synopsis: mgu74ccdf
Description:

This package provides a package containing an environment representing the MG_U74C.cdf file.

r-msbackendrawfilereader 1.16.0
Propagated dependencies: r-spectra@1.18.2 r-s4vectors@0.46.0 r-rawrr@1.18.0 r-protgenerics@1.40.0 r-mscoreutils@1.20.0 r-iranges@2.42.0 r-biocparallel@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/fgcz/MsBackendRawFileReader
Licenses: GPL 3
Synopsis: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
Description:

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

r-meebodata 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MEEBOdata
Licenses: LGPL 2.0+
Synopsis: MEEBO set and MEEBO controls
Description:

R objects describing the MEEBO set.

r-muspadata 1.2.0
Propagated dependencies: r-experimenthub@2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/peicai/muSpaData
Licenses: Expat
Synopsis: Multi-sample multi-group spatially resolved transcriptomic data
Description:

Data package containing a multi-sample multi-group spatial dataset in SpatialExperiment Bioconductor object format.

r-msmb 1.28.0
Propagated dependencies: r-tibble@3.2.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MSMB
Licenses: LGPL 2.0+
Synopsis: Data sets for the book 'Modern Statistics for Biology'
Description:

Data sets for the book Modern Statistics for Modern Biology', S.P. Holmes and W. Huber.

r-mgu74bprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bprobe
Licenses: LGPL 2.0+
Synopsis: Probe sequence data for microarrays of type mgu74b
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74B\_probe\_tab.

r-macsdata 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MACSdata
Licenses: FSDG-compatible
Synopsis: Test datasets for the MACSr package
Description:

Test datasets from the MACS3 test examples are use in the examples of the `MACSr` package. All 9 datasets are uploaded to the `ExperimentHub`. The original data can be found at: https://github.com/macs3-project/MACS/.

r-msbackendmassbank 1.18.0
Propagated dependencies: r-spectra@1.18.2 r-s4vectors@0.46.0 r-protgenerics@1.40.0 r-mscoreutils@1.20.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biocparallel@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/RforMassSpectrometry/MsBackendMassbank
Licenses: Artistic License 2.0
Synopsis: Mass Spectrometry Data Backend for MassBank record Files
Description:

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

r-muleadata 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ELTEbioinformatics/muleaData
Licenses: Expat
Synopsis: Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package
Description:

ExperimentHubData package for the mulea comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.

r-msstatstmt 2.18.0
Propagated dependencies: r-plotly@4.10.4 r-msstatsconvert@1.20.0 r-msstats@4.18.0 r-lmertest@3.1-3 r-lme4@1.1-37 r-limma@3.64.1 r-htmltools@0.5.8.1 r-ggplot2@3.5.2 r-data-table@1.17.4 r-checkmate@2.3.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://msstats.org/msstatstmt/
Licenses: Artistic License 2.0
Synopsis: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Description:

The package provides statistical tools for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling. It provides multiple functionalities, including aata visualization, protein quantification and normalization, and statistical modeling and inference. Furthermore, it is inter-operable with other data processing tools, such as Proteome Discoverer, MaxQuant, OpenMS and SpectroMine.

r-mu6500subdcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu6500subdcdf
Licenses: LGPL 2.0+
Synopsis: mu6500subdcdf
Description:

This package provides a package containing an environment representing the Mu6500subD.CDF file.

r-mbased 1.44.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-runit@0.4.33 r-genomicranges@1.60.0 r-biocparallel@1.42.0 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MBASED
Licenses: Artistic License 2.0
Synopsis: Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Description:

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

r-metabosignal 1.40.0
Propagated dependencies: r-rcurl@1.98-1.17 r-org-hs-eg-db@3.21.0 r-mygene@1.46.0 r-mwastools@1.34.0 r-keggrest@1.48.0 r-kegggraph@1.68.0 r-igraph@2.1.4 r-hpar@1.50.0 r-ensdb-hsapiens-v75@2.99.0 r-biomart@2.64.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetaboSignal
Licenses: GPL 3
Synopsis: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Description:

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

r-mirbaseversions-db 1.1.0
Propagated dependencies: r-rsqlite@2.3.11 r-gtools@3.9.5 r-dbi@1.2.3 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/miRBaseVersions.db
Licenses: Artistic License 2.0
Synopsis: Collection of mature miRNA names of 22 different miRBase release versions
Description:

Annotation package containing all available miRNA names from 22 versions (data from http://www.mirbase.org/).

r-mu22v3-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mu22v3.db
Licenses: Artistic License 2.0
Synopsis: FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)
Description:

FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3) assembled using data from public repositories.

r-mosbi 1.16.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mosbi
Licenses: FSDG-compatible
Synopsis: Molecular Signature identification using Biclustering
Description:

This package is a implementation of biclustering ensemble method MoSBi (Molecular signature Identification from Biclustering). MoSBi provides standardized interfaces for biclustering results and can combine their results with a multi-algorithm ensemble approach to compute robust ensemble biclusters on molecular omics data. This is done by computing similarity networks of biclusters and filtering for overlaps using a custom error model. After that, the louvain modularity it used to extract bicluster communities from the similarity network, which can then be converted to ensemble biclusters. Additionally, MoSBi includes several network visualization methods to give an intuitive and scalable overview of the results. MoSBi comes with several biclustering algorithms, but can be easily extended to new biclustering algorithms.

r-multimed 2.32.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MultiMed
Licenses: FSDG-compatible
Synopsis: Testing multiple biological mediators simultaneously
Description:

This package implements methods for testing multiple mediators.

r-mu11ksubbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu11ksubbcdf
Licenses: LGPL 2.0+
Synopsis: mu11ksubbcdf
Description:

This package provides a package containing an environment representing the Mu11KsubB.CDF file.

r-metaseqr2 1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://www.fleming.gr
Licenses: GPL 3+
Synopsis: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
Description:

This package provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

r-mudata 1.14.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-s4vectors@0.46.0 r-rhdf5@2.52.0 r-multiassayexperiment@1.34.0 r-matrix@1.7-3 r-delayedarray@0.34.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ilia-kats/MuData
Licenses: GPL 3
Synopsis: Serialization for MultiAssayExperiment Objects
Description:

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

r-matrixrider 1.42.0
Propagated dependencies: r-xvector@0.48.0 r-tfbstools@1.46.0 r-s4vectors@0.46.0 r-iranges@2.42.0 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MatrixRider
Licenses: GPL 3
Synopsis: Obtain total affinity and occupancies for binding site matrices on a given sequence
Description:

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

r-mgu74bv2-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2.db
Licenses: Artistic License 2.0
Synopsis: Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2)
Description:

Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2) assembled using data from public repositories.

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