The package analyzes the Curve ROC, identificates it among different types of Curve ROC and calculates the area under de curve through the method that is most accuracy. This package is able to standarizate proper and improper pAUC.

This package provides a DBI interface to MySQL / MariaDB. The RMySQL package contains an old implementation based on legacy code from S-PLUS which is being phased out. A modern MySQL client based on Rcpp is available from the RMariaDB package.

Universal S-expression parser with specific support for Common Lisp, Scheme, and RDF/SPARQL.

This package adopts tipping-point theory to transcriptome profiles to help unravel disease regulatory trajectory.

This package provides a toolbox to process, analyze and visualize spatial single-cell expression data.

This package provides a simple web interface for the RNA-centric annotation system (RCAS).

This package contains functions for non-parametric survival analysis of exact and interval-censored observations.

This package provides a complete unit test system and functions to implement its GUI part.

This package provides functions for easily manipulating colors, creating color scales and calculating color distances.

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

scTGIF connects the cells and the related gene functions without cell type label.

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828.

This package provides a set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

This package provides a set of functions to create and interact with dynamic documents and vignettes.

This package provides a function to impute missing gene expression microarray data, using nearest neighbor averaging.

This package offers an easy to use way to draw a Venn diagram with ggplot2.

Tools for integrating spatially-misaligned GIS datasets. Part of the Sub-National Geospatial Data Archive System.

This package provides template functions to assist in building friendly R packages that praise their users.

This is a package for pretty-printing R code without changing the user's formatting intent.

Gtable is a collection of tools to make it easier to work with "tables" of grobs.

This package provides a parallel backend for the %dopar% function using the snow package.

Identification of differentially expressed genes and false discovery rate (FDR) calculation by Multiple Comparison test.

This is a package for identification of metabolites using high precision mass spectrometry. MS peaks are used to derive a ranked list of sum formulae, alternatively for a given sum formula the theoretical isotope distribution can be calculated to search in MS peak lists.

This package uses both ridge and lasso penalties (and extensions) to penalize specific parameters in structural equation models. The package offers additional cost functions, cross validation, and other extensions beyond traditional structural equation models. It also contains a function to perform exploratory mediation (XMed).