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python-crontab 3.3.0
Dependencies: mcron@1.2.3 python-dateutil@2.9.0
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://gitlab.com/doctormo/python-crontab/
Licenses: LGPL 3+
Build system: pyproject
Synopsis: Module for reading and writing crontab files
Description:

This Python module can read, write crontab files, and access the system cron automatically and simply using a direct API.

python-breathe 4.36.0
Propagated dependencies: python-docutils@0.21.2 python-sphinx@9.0.3
Channel: guix
Location: gnu/packages/sphinx.scm (gnu packages sphinx)
Home page: https://www.breathe-doc.org
Licenses: Modified BSD
Build system: pyproject
Synopsis: ReStructuredText and Sphinx bridge to Doxygen
Description:

This package is an extension to reStructuredText and Sphinx to be able to read and render the Doxygen xml output.

python-leather 0.4.0
Channel: guix
Location: gnu/packages/wireservice.scm (gnu packages wireservice)
Home page: https://leather.rtfd.org
Licenses: Expat
Build system: pyproject
Synopsis: Python charting for 80% of humans
Description:

Leather is a Python charting library for those who need charts now and don't care if they're perfect.

python-hdlmake 4.0
Propagated dependencies: python-networkx@3.4.2
Channel: guix
Location: gnu/packages/electronics.scm (gnu packages electronics)
Home page: https://ohwr.gitlab.io/project/hdl-make/
Licenses: GPL 3+
Build system: pyproject
Synopsis: Generate multi-purpose makefiles for HDL projects
Description:

Hdlmake helps manage and share HDL code by automatically finding file dependencies, writing synthesis and simulation Makefiles.

python-strenum 0.4.15
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/irgeek/StrEnum
Licenses: Expat
Build system: pyproject
Synopsis: Enum that inherits from str
Description:

StrEnum is a Python enum.Enum that inherits from str to complement enum.IntEnum in the standard library.

python-shapely 2.1.1
Dependencies: geos@3.12.1
Propagated dependencies: python-numpy@2.3.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/shapely/shapely
Licenses: Modified BSD
Build system: pyproject
Synopsis: Library for the manipulation and analysis of geometric objects
Description:

Shapely is a Python package for manipulation and analysis of planar geometric objects. It is based on the GEOS library.

python-makefun 1.16.0-0.bacb3e1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/smarie/python-makefun
Licenses: Modified BSD
Build system: pyproject
Synopsis: Library to dynamically create python functions
Description:

makefun helps create functions dynamically with a given signature. It was largely inspired by python-decorator and functools.

python-dolfinx 0.6.0
Dependencies: openmpi@4.1.6 scotch@7.0.7 zlib@1.3.1 pt-scotch@7.0.7 parmetis@4.0.3 python-mpi4py@4.1.0 python-numpy@2.3.1 metis@5.1.0 hdf5-parallel-openmpi@1.14.6 python@3.12.12 pugixml@1.12.1 petsc-openmpi@3.24.0 boost@1.89.0 fenics-basix@0.6.0 fenics-ffcx@0.6.0 python-petsc4py@3.24.0 openssh-sans-x@10.3p1 python-fenics-basix@0.6.0 python-fenics-ufl@2023.1.0 python-fenics-ffcx@0.6.0 python-cffi@1.17.1 pybind11@3.0.2 dolfinx@0.6.0
Channel: guix-hpc-non-free
Location: inrae/mse.scm (inrae mse)
Home page: https://github.com/FEniCS/dolfinx
Licenses: LGPL 3
Build system: python
Synopsis: New version of DOLFIN and is being actively developed
Description:

DOLFINx is the computational environment of FEniCSx and implements the FEniCS Problem Solving Environment in C++ and Python.

python-tslearn 0.7.0
Propagated dependencies: python-h5py@3.15.1 python-joblib@1.5.2 python-numba@0.62.1 python-numpy@2.3.1 python-pytorch@2.10.0 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/time-series.scm (guix-science packages time-series)
Home page: https://github.com/tslearn-team/tslearn
Licenses: FreeBSD
Build system: pyproject
Synopsis: Machine learning toolkit for time series data
Description:

This is a Python library for time series data mining. It provides tools for time series classification, clustering and forecasting.

python-scmrepo 3.6.1
Propagated dependencies: python-aiohttp-retry@2.9.1 python-asyncssh@2.22.0 python-dulwich@1.0.0 python-fsspec@2026.1.0 python-funcy@1.14 python-gitpython@3.1.44 python-pathspec@1.0.4 python-pygit2@1.18.2 python-pygtrie@2.5.0 python-tqdm@4.67.1
Channel: guix-science
Location: guix-science/packages/version-control.scm (guix-science packages version-control)
Home page: https://dvc.org/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: SCM wrapper and fsspec filesystem for Git for use in DVC
Description:

This package provides a SCM wrapper and fsspec filesystem for Git for use in DVC.

python-fastdfe 1.3.3
Propagated dependencies: python-biopython@1.86 python-cyvcf2@0.31.2 python-jsonpickle@4.0.0 python-matplotlib@3.10.8 python-mpmath@1.3.0 python-multiprocess@0.70.18 python-numpy@2.3.1 python-pandas@2.3.3 python-pyyaml@6.0.2 python-requests@2.32.5 python-scipy@1.16.3 python-seaborn@0.13.2 python-tqdm@4.67.1 python-typing-extensions@4.15.0
Channel: alx-bioinfo
Location: alx-bioinfo/packages/bioinfo.scm (alx-bioinfo packages bioinfo)
Home page: https://fastdfe.readthedocs.io/en/latest/index.html
Licenses: GPL 3
Build system: pyproject
Synopsis: Fast and flexible inference of the distribution of fitness effects (DFE).
Description:

Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.

python-manhole 1.8.1
Channel: atomized
Location: atomized/packages/python-xyz.scm (atomized packages python-xyz)
Home page: https://github.com/ionelmc/python-manhole
Licenses: FreeBSD
Build system: pyproject
Synopsis: Manhole is in-process service that will accept unix domain socket connections and present thestacktraces for all threads and an interactive prompt.
Description:

Manhole is in-process service that will accept unix domain socket connections and present thestacktraces for all threads and an interactive prompt.

python-sncosmo 2.12.1
Propagated dependencies: python-astropy@8.0.0 python-extinction@0.4.8 python-h5py@3.15.1 python-looseversion@1.3.0 python-numpy@2.3.1 python-pyyaml@6.0.2 python-scipy@1.16.3
Channel: guix
Location: gnu/packages/astronomy.scm (gnu packages astronomy)
Home page: https://sncosmo.readthedocs.org
Licenses: Modified BSD
Build system: pyproject
Synopsis: Package for supernova cosmology based on astropy
Description:

SNCosmo is a Python library for supernova cosmology analysis. It aims to make such analysis both as flexible and clear as possible.

python-piccolo 1.34.0
Propagated dependencies: python-black@26.3.1 python-colorama@0.4.6 python-email-validator@2.2.0 python-inflection@0.5.1 python-jinja2@3.1.2 python-pydantic@2.12.5 python-targ@0.6.0 python-typing-extensions@4.15.0
Channel: guix
Location: gnu/packages/databases.scm (gnu packages databases)
Home page: https://github.com/piccolo-orm/piccolo
Licenses: Expat
Build system: pyproject
Synopsis: ORM and query builder which supports asyncio
Description:

Piccolo is a fast, user friendly Object–relational mapping and query builder which supports asyncio and is fully type-annotated.

python-hiredis 3.1.0
Dependencies: hiredis@1.1.0
Channel: guix
Location: gnu/packages/databases.scm (gnu packages databases)
Home page: https://github.com/redis/hiredis-py
Licenses: Modified BSD
Build system: pyproject
Synopsis: Python extension that wraps protocol parsing code in hiredis
Description:

Python-hiredis is a python extension that wraps protocol parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.

python-pymysql 1.1.1
Propagated dependencies: python-cryptography@44.0.0 python-pynacl@1.5.0
Channel: guix
Location: gnu/packages/databases.scm (gnu packages databases)
Home page: https://github.com/PyMySQL/PyMySQL/
Licenses: Expat
Build system: pyproject
Synopsis: Pure-Python MySQL driver
Description:

PyMySQL is a pure-Python MySQL client library, based on PEP 249. Most public APIs are compatible with mysqlclient and MySQLdb.

python-certifi 2025.06.15
Channel: guix
Location: gnu/packages/python-crypto.scm (gnu packages python-crypto)
Home page: https://certifi.io/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Python CA certificate bundle
Description:

Certifi is a Python library that contains a CA certificate bundle, which is used by the Requests library to verify HTTPS requests.

python-sniffio 1.3.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/python-trio/sniffio
Licenses: Expat ASL 2.0
Build system: pyproject
Synopsis: Detect which async library a program is running under
Description:

This package detects which async library a program is running under. It supports multiple async I/O packages, like Trio, and asyncio.

python-tasklib 2.5.1
Dependencies: taskwarrior@3.4.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/GothenburgBitFactory/tasklib
Licenses: Modified BSD
Build system: pyproject
Synopsis: Official Taskwarrior library for Python
Description:

tasklib is a Python library for interacting with Taskwarrior databases, using a queryset API similar to that of Django's ORM.

python-rcssmin 1.2.0
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: http://opensource.perlig.de/rcssmin/
Licenses: ASL 2.0
Build system: pyproject
Synopsis: CSS Minifier
Description:

The minifier is based on the semantics of the YUI compressor, which itself is based on the rule list by Isaac Schlueter.

python-xmldiff 3.0b1
Propagated dependencies: python-lxml@6.0.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/Shoobx/xmldiff
Licenses: Expat
Build system: pyproject
Synopsis: Creates diffs of XML files
Description:

This Python tool figures out the differences between two similar XML files, in the same way the diff utility does it.

python-mne-ari 0.1.2-1.3c78a18
Propagated dependencies: python-mne@1.11.0 python-numpy@2.3.1 python-scipy@1.16.3
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/john-veillette/mne-ari
Licenses: Modified BSD
Build system: pyproject
Synopsis: All-Resolutions Inference for M/EEG
Description:

This package implements both parametric and permutation-based ARI, and is meant to be compatible with the MNE-Python ecosystem.

python-librosa 0.11.0
Propagated dependencies: python-audioread@3.0.1 python-decorator@5.2.1 python-joblib@1.5.2 python-lazy-loader@0.4 python-msgpack@1.1.2 python-numba@0.62.1 python-numpy@2.3.1 python-pooch@1.8.1 python-scikit-learn@1.7.2 python-scipy@1.16.3 python-soundfile@0.13.1 python-soxr@1.0.0 python-typing-extensions@4.15.0
Channel: guix
Location: gnu/packages/audio.scm (gnu packages audio)
Home page: https://librosa.org
Licenses: ISC
Build system: pyproject
Synopsis: Python module for audio and music processing
Description:

librosa is a python package for music and audio analysis. It provides the building blocks necessary to create music information retrieval systems.

python-baltica 1.1.2
Propagated dependencies: gunicorn@25.3.0 python-anndata@0.12.7 python-click@8.3.1 python-flask@3.1.0 python-flask-wtf@1.2.2 python-h5py@3.15.1 python-numpy@2.3.1 python-psutil@7.2.2 python-pysam@0.23.3 python-pyyaml@6.0.2 python-scipy@1.16.3 r-biocmanager@1.30.27 r-dplyr@1.2.1 r-genomicranges@1.64.0 r-here@1.0.2 r-openxlsx@4.2.8.1 r-optparse@1.8.2 r-readr@2.2.0 r-rsamtools@2.28.0 r-stringr@1.6.0 r-tidyr@1.3.2 r-upsetr@1.4.0 r-yaml@2.3.12 snakemake@8.30.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/dieterich-lab/Baltica
Licenses: Expat
Build system: pyproject
Synopsis: Integrated splice junction usage analysis
Description:

This framework facilitates the execution of differential junction usage (DJU) methods. Additionally, it enables the integration of results from multiple DJU methods.

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