This package provides very fast read and write access to images stored in the NIfTI-1 and ANALYZE-7.5 formats, with seamless synchronisation between compiled C and interpreted R code. It also provides a C/C++ API that can be used by other packages.

This package arranges data by a set of methods. It uses rearrangers to reorder data points and mutators to change their values. From basic utilities, to centering the greatest value, to swirling in 3-dimensional space, rearrr enables creativity when plotting and experimenting with data.

This package provides negative binomial models for two-group comparisons and regression inferences from RNA-sequencing data.

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

This package provides two convenience functions assert() and test_pkg() to facilitate testing R packages.

This package provides a collection of templates to author preregistration documents for scientific studies in PDF format.

This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.

Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.

This package provides full screen and partial loading screens for Shiny with spinners, progress bars, and notifications.

This package provides a job queue that uses PostgreSQL for storing jobs and locking between worker processes.

This library provides methods to read Adobe Font Metrics (afm) files and use the data therein.

This pure ruby library provides spawn() which is almost perfectly compatible with ruby 1.9's.

This package provides simple utility functions that are shared across several packages maintained by the Tanay lab.

Command-line tool and C library for reading files from popular stats packages like SAS, Stata and SPSS.

This package provides the random ferns classifier by Ozuysal, Calonder, Lepetit and Fua (2009) <doi:10.1109/TPAMI.2009.23>, modified for generic and multi-label classification and featuring OOB error approximation and importance measure as introduced in Kursa (2014) <doi:10.18637/jss.v061.i10>.

This package provides a library for rolling windows operations. The package enables full control over the window length, window lag, and time indices. With a runner one can apply any R function on rolling windows. The package eases work with equally and unequally spaced time series.

This package provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

This package provides functions and classes for de novo prediction of transcription factor binding consensus by heuristic search.

This package provides an assortment of R functions that is suitable for all types of microbial diversity analyses.

This is a package for binomial and Poisson regression for clustered data, fixed and random effects with bootstrapping.

This package provides an interface to use SPARQL to pose SELECT or UPDATE queries to an end-point.

This package provides UI widget and layout functions for writing Shiny apps that work well on small screens.

This package provides a pure Ruby implementation of the RFC 7519 OAuth JWT standard.

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.