A web-based frontend for Retroshare. Communicates with the client through the JSON API.

This package provides an easy way to determine which directories on the user's computer should be used to save data, caches and logs. It is a port of Python's Appdirs to R.

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

Perform robust estimation and inference in platform trials and other master protocol trials. Yuhan Qian, Yifan Yi, Jun Shao, Yanyao Yi, Gregory Levin, Nicole Mayer-Hamblett, Patrick J. Heagerty, Ting Ye (2025) <doi:10.48550/arXiv.2411.12944>.

The Agricultural Production Systems sIMulator ('APSIM') is a widely used to simulate the agricultural systems for multiple crops. This package is designed to create, modify and run apsimx files in the APSIM Next Generation <https://www.apsim.info/>.

This package implements distance based probability models for ranking data. The supported distance metrics include Kendall distance, Spearman distance, Footrule distance, Hamming distance, Weighted-tau distance and Weighted Kendall distance. Phi-component model and mixture models are also supported.

This package contains basic tools for visualizing, interpreting, and building regression models. It has been designed for use with the book Introduction to Regression and Modeling with R by Adam Petrie, Cognella Publishers, ISBN: 978-1-63189-250-9.

This package implements the robust functional analysis of variance (RoFANOVA), described in Centofanti et al. (2023) <doi:10.1093/jrsssc/qlad074>. It allows testing mean differences among groups of functional data by being robust against the presence of outliers.

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

EXIF Reader is a module to read EXIF from JPEG and TIFF images.

This package provides a Ruby framework for rapid API development with great conventions.

This package provides methods for working with Illumina arrays using the gdsfmt package.

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

This package provides functions for converting, importing, and drawing PostScript pictures in R plots.

This package provides the tools necessary to do non-standard evaluation (NSE) in R.

This library can read and update netrc files, preserving formatting including comments and whitespace.

Diffy provides a convenient way to generate a diff from two strings or files.

This package provides a package containing an environment representing the Ecoli.CDF file.

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

This package provides a package containing an environment representing the Maize.cdf file.

This package provides a package containing an environment representing the Test3.CDF file.

This package provides a package containing an environment representing the Test2.CDF file.

This package provides a package containing an environment representing the Test1.CDF file.

This package provides a package containing an environment representing the wheat.cdf file.