An R interface to United States Environmental Protection Agency (EPA) Assessment, Total Maximum Daily Load (TMDL) Tracking and Implementation System ('ATTAINS') data. ATTAINS is the EPA database used to track information provided by states about water quality assessments conducted under federal Clean Water Act requirements. ATTAINS information and API information is available at <https://www.epa.gov/waterdata/attains>.
An interface to iDigBio's
search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio
is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio
.
The TRUST4 or MiXCR
is used to identify the clonotypes. The goal of rTCRBCRr
is to process the results from these clonotyping tools, and analyze the clonotype repertoire metrics based on chain names and IGH isotypes. The manuscript is still under preparation for publication for now. The references describing the methods in this package will be added later.
This package provides functions to process minute level actigraphy-measured activity counts data and extract commonly used physical activity volume and fragmentation metrics.
This package provides a lightweight package to access spatial basemaps from open sources such as OpenStreetMap
', Carto', Mapbox and others in R.
This package provides Capital Budgeting Analysis functionality and the essential Annuity loan functions. Also computes Loan Amortization Schedules including schedules with irregular payments.
Central limit theorem experiments presented by data frames or plots. Functions include generating theoretical sample space, corresponding probability, and simulated results as well.
Calculations of "EP15-A3 document. A manual for user verification of precision and estimation of bias" CLSI (2014, ISBN:1-56238-966-1).
Computes p-values using the largest root test using an approximation to the null distribution by Johnstone (2008) <DOI:10.1214/08-AOS605>.
The DWD provides gridded radar data for Germany in binary format. dwdradar reads these files and enables a fast conversion into numerical format.
An interface to the Fish Tree of Life API to download taxonomies, phylogenies, fossil calibrations, and diversification rate information for ray-finned fishes.
This package provides a series of utility functions to help with reshaping hierarchy of data tree, and reform the structure of data tree.
Tools, tutorials, and demos of Item Factor Analysis using OpenMx
'. This software is described in Pritikin & Falk (2020) <doi:10.1177/0146621620929431>.
Various utilities to manipulate multivariate polynomials. The package is almost completely superceded by the spray and mvp packages, which are much more efficient.
Distance between multivariate Cauchy distributions, as presented by N. Bouhlel and D. Rousseau (2022) <doi:10.3390/e24060838>. Manipulation of multivariate Cauchy distributions.
This package provides tools for estimating multivariate probit models, calculating conditional and unconditional expectations, and calculating marginal effects on conditional and unconditional expectations.
Indices, heuristics, simulations and strategies to help determine the number of factors/components to retain in exploratory factor analysis and principal component analysis.
This package provides a collection of aesthetically appealing color palettes for effective data visualization with ggplot2'. Palettes support both discrete and continuous data.
Maximum homogeneity clustering algorithm for one-dimensional data described in W. D. Fisher (1958) <doi:10.1080/01621459.1958.10501479> via dynamic programming.
This package provides functions to get prediction intervals and prediction points of future observations from mixture distributions like gamma, beta, Weibull and normal.
This package provides functions to estimate and plot smooth or linear population trends, or population indices, from animal or plant count survey data.
This package provides a range of quadratic forms are evaluated, using efficient methods. Unnecessary transposes are not performed. Complex values are handled consistently.
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Interface to Sudachi <https://github.com/WorksApplications/Sudachi>
, a Japanese morphological analyzer. This is a port of what is available in Python.