Graphite provides networks derived from eight public pathway databases, and automates the conversion of node identifiers (e.g. from Entrez IDs to gene symbols).

This library lets you place an exclusive or shared lock on a file using the appropriate system call provided by the underlying operating system.

This package allows for the imputation of the last largest censored observantions. This method brings less bias and more efficient estimates for AFT models.

This library provides functions to calculate the differences between two tree-like structures. It is similar to Ruby's built-in TSort module.

Calculates intra-regional and inter-regional similarities based on user-provided spatial vector objects (regions) and spatial raster objects (cells with values). Implemented metrics include inhomogeneity, isolation (Haralick and Shapiro (1985) <doi:10.1016/S0734-189X(85)90153-7>, Jasiewicz et al. (2018) <doi:10.1016/j.cageo.2018.06.003>), and distinction (Nowosad (2021) <doi:10.1080/13658816.2021.1893324>).

Connects dataframes/tables with a remote data source. Raw data downloaded from the data source can be further processed and transformed using data preparation code that is also baked into the dataframe/table. Refreshable dataframes can be shared easily (e.g. as R data files). Their users do not need to care about the inner workings of the data update mechanisms.

This package implements the fast iterative shrinkage-thresholding algorithm (FISTA) algorithm to fit a Gamma distribution with an elastic net penalty as described in Chen, Arakvin and Martin (2018) <doi:10.48550/arXiv.1804.07780>. An implementation for the case of the exponential distribution is also available, with details available in Chen and Martin (2018) <doi:10.2139/ssrn.3085672>.

Building interactive web applications with R is incredibly easy with Shiny. Behind the scenes, Shiny builds a reactive graph that can quickly become intertwined and difficult to debug. The reactlog package provides a visual insight into that black box of Shiny reactivity by constructing a directed dependency graph of the application's reactive state at any time point in a reactive recording.

This package provides methods for fast computation of running sample statistics for time series. These include: (1) mean, (2) standard deviation, and (3) variance over a fixed-length window of time-series, (4) correlation, (5) covariance, and (6) Euclidean distance (L2 norm) between short-time pattern and time-series. Implemented methods utilize Convolution Theorem to compute convolutions via Fast Fourier Transform (FFT).

Display spatial data with interactive maps powered by the open- source JavaScript library Leaflet (see <https://leafletjs.com/>). Maps can be rendered in a web browser or displayed in the HTML viewer pane of RStudio'. This package is designed to be easy to use and can create complex maps with vector and raster data, web served map tiles and interface elements.

Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image and text overlays, generate camera vignette effects, and add titles to images.

Huber-type estimation for mean, covariance and (regularized) regression. For all the methods, the robustification parameter tau is chosen by a tuning-free principle.

This package provides a web framework inspired by express.js to build any web service from multi-page websites to RESTful application programming interfaces.

Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.

Compute approach bias scores using different scoring algorithms, compute bootstrapped and exact split-half reliability estimates, and compute confidence intervals for individual participant scores.

This package provides a suite of functions for finance, including the estimation of variance matrices via a statistical factor model or Ledoit-Wolf shrinkage.

Record algorithmic and analytic meta data along a workflow to store that in a bitfield, which can be published alongside any (modelled) data products.

Dataset containing cumulative COVID-19 deaths (absolute and per 100,000 pop) at the regional level (mostly NUTS 3) for 31 EU/EFTA countries.

This package provides a wrapper for the Clockify API <https://docs.clockify.me/>, making it possible to query, insert and update time keeping data.

This package performs detection of Differential Item Functioning using the method DIFboost as proposed by Schauberger and Tutz (2016) <doi:10.1111/bmsp.12060>.

Geospatial data integration framework that merges raster, spatial polygon, and (dynamic) spatial points data into a spatial (panel) data frame at any geographical resolution.

This package provides a modern idiomatic header-only C++ interface for libhdf5'. Original software can be found at <https://github.com/highfive-devs/highfive/>.

This package provides a collection of hypothesis tests and confidence intervals based on the likelihood ratio <https://en.wikipedia.org/wiki/Likelihood-ratio_test>.

Additional appenders for the logging package lgr that support logging to Elasticsearch', Dynatrace', AWSCloudWatchLog', databases, syslog', email- and push notifications, and more.