This package provides functions to access NASA's Earth Imagery and Assets API and the Earth Observatory Natural Event Tracker (EONET) webservice.
This package provides functions to flash your hue lights, or text yourself, from R. Designed to be used with long running scripts.
This package provides a utility to quickly obtain clean and tidy sports odds from The Odds API <https://the-odds-api.com>.
Mappings for estimated one rep max from commonly used formulas. Convenience functions for turning mass/rep/set data into useful derived quantities.
Fork of vote_2.3-2', Raftery et al. (2021) <DOI:10.32614/RJ-2021-086>, with additional support for stochastic experimentation.
Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
This package provides functions and data sets for data sharpening. Nonparametric regressions are computed subject to smoothness and other kinds of penalties.
Shiny wrappers for the RGL package. This package exposes RGL's ability to export WebGL visualization in a shiny-friendly format.
This package provides a group of functions that support the sf package, focused primarily on repairing polygons that break when re-projected.
This package provides the "r, q, p, and d" distribution functions for the triangle distribution. Also includes maximum likelihood estimation of parameters.
An efficient algorithm for data twinning. This work is supported by U.S. National Science Foundation grants DMREF-1921873 and CMMI-1921646.
The package provides the data for the RDP Classifier 2.14 released in August 2023. It contains the latest bacterial and archaeal taxonomy training set No. 19 as described in Wang Q, Cole JR. 2024. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc 0:e01063-23. <doi.org/10.1128/mra.01063-23>.
Read Statistical Data and Metadata Exchange (SDMX) XML data. This the main transmission format used in official statistics. Data can be imported from local SDMX-ML files or a SDMX web-service and will be read in as is into a dataframe object. The RapidXML C++ library <https://rapidxml.sourceforge.net/> is used to parse the XML data.
An interface to iDigBio's search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio.
An R interface to United States Environmental Protection Agency (EPA) Assessment, Total Maximum Daily Load (TMDL) Tracking and Implementation System ('ATTAINS') data. ATTAINS is the EPA database used to track information provided by states about water quality assessments conducted under federal Clean Water Act requirements. ATTAINS information and API information is available at <https://www.epa.gov/waterdata/attains>.
Fast alternatives to several relatively slow raster package functions. For large rasters, the functions run from 5 to approximately 100 times faster than the raster package functions they replace. The fasterize package, on which one function in this package depends, includes an implementation of the scan line algorithm attributed to Wylie et al. (1967) <doi:10.1145/1465611.1465619>.
The TRUST4 or MiXCR is used to identify the clonotypes. The goal of rTCRBCRr is to process the results from these clonotyping tools, and analyze the clonotype repertoire metrics based on chain names and IGH isotypes. The manuscript is still under preparation for publication for now. The references describing the methods in this package will be added later.
Graphite provides networks derived from eight public pathway databases, and automates the conversion of node identifiers (e.g. from Entrez IDs to gene symbols).
This package allows for the imputation of the last largest censored observantions. This method brings less bias and more efficient estimates for AFT models.
This library lets you place an exclusive or shared lock on a file using the appropriate system call provided by the underlying operating system.
This library provides functions to calculate the differences between two tree-like structures. It is similar to Ruby's built-in TSort module.
This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.
This package provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
This package provides functions to process minute level actigraphy-measured activity counts data and extract commonly used physical activity volume and fragmentation metrics.