Automated pain scoring from paw withdrawal tracking data. Based on Jones et al. (2020) "A machine-vision approach for automated pain measurement at millisecond timescales" <doi:10.7554/eLife.57258>.

Latent space models for multivariate networks (multiplex) estimated via MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D Angelo et al. (2018) <arXiv:1807.03874>.

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.

This package provides tools to perform some descriptive data analysis for assets. Manage the portfolio and capital of assets. It also downloads and organizes data from the Tehran Stock Exchange (TSE).

Performing the hypothesis tests for the two sample problem based on order statistics and power comparisons. Calculate the test statistic, density, distribution function, quantile function, random number generation and others.

This package provides a suite of easy to use functions for collecting social media data and generating networks for analysis. Supports Mastodon, YouTube, Reddit and Web 1.0 data sources.

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

This package offers a quick and straight-forward way to explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.

This package provides tools to fit and predict with the high-dimensional principal fitted components model. This model is described by Cook, Forzani, and Rothman (2012) doi:10.1214/11-AOS962.

This package provides a collection of perceptually uniform color maps made by Peter Kovesi (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the Centre for Exploration Targeting (CET).

This package provides functions used to build R packages. It locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.

This package provides R bindings to the Sundown Markdown rendering library (https://github.com/vmg/sundown). Markdown is a plain-text formatting syntax that can be converted to XHTML or other formats.

ExtRemes is a suite of functions for carrying out analyses on the extreme values of a process of interest; be they block maxima over long blocks or excesses over a high threshold.

This package is a pure Rust implementation of Public-Key Cryptography Standards (PKCS) #8: Private-Key Information Syntax Specification (RFC 5208), with additional support for PKCS#8v2 asymmetric key packages (RFC 5958).

This package is a pure Rust implementation of Public-Key Cryptography Standards (PKCS) #8: Private-Key Information Syntax Specification (RFC 5208), with additional support for PKCS#8v2 asymmetric key packages (RFC 5958).

This package is a pure Rust implementation of Public-Key Cryptography Standards (PKCS) #8: Private-Key Information Syntax Specification (RFC 5208), with additional support for PKCS#8v2 asymmetric key packages (RFC 5958).

This package is a pure Rust implementation of Public-Key Cryptography Standards (PKCS) #8: Private-Key Information Syntax Specification (RFC 5208), with additional support for PKCS#8v2 asymmetric key packages (RFC 5958).

Parse and inspect Rust literals (i.e. tokens in the Rust programming language representing fixed values). Particularly useful for proc macros, but can also be used outside of a proc-macro context.

CZMQ Ruby bindings, based on the generated low-level FFI bindings of CZMQ. The focus of of CZTop is on being easy to use and providing first class support for security mechanisms.

An R interface for libeemd (Luukko, Helske, Räsänen, 2016) <doi:10.1007/s00180-015-0603-9>, a C library of highly efficient parallelizable functions for performing the ensemble empirical mode decomposition (EEMD), its complete variant (CEEMDAN), the regular empirical mode decomposition (EMD), and bivariate EMD (BEMD). Due to the possible portability issues CRAN version no longer supports OpenMP, but you can install OpenMP-supported version from GitHub: <https://github.com/helske/Rlibeemd/>.

The routine twosample_test() in this package runs the two sample test using various test statistic. The p values are found via permutation or large sample theory. The routine twosample_power() allows the calculation of the power in various cases, and plot_power() draws the corresponding power graphs. The routine run.studies allows a user to quickly study the power of a new method and how it compares to some of the standard ones.

This package provides a custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.

This package provides formatting linting to roxygen2 tags. Linters report roxygen2 tags that do not conform to a standard style. These linters can be a helpful check for building more consistent documentation and to provide reminders about best practices or checks for typos. Default linting suites are provided for common style guides such as the one followed by the tidyverse', though custom linters can be registered by other packages or be custom-tailored to a specific package.

API for using episensr', Basic sensitivity analysis of the observed relative risks adjusting for unmeasured confounding and misclassification of the exposure/outcome, or both. See <https://cran.r-project.org/package=episensr>.