Estimation of partial correlation matrix using ridge penalty followed by thresholding and reestimation. Under multivariate Gaussian assumption, the matrix constitutes an Gaussian graphical model (GGM).

This package provides a seamless bridge between keras and the tidymodels frameworks. It allows for the dynamic creation of parsnip model specifications for keras models.

This package contains data sets to accompany the book: Lazic SE (2016). "Experimental Design for Laboratory Biologists: Maximising Information and Improving Reproducibility". Cambridge University Press.

Functionality to estimate relative risks, risk differences, and partial effects from mixed model. Marginalisation over random effect terms is accomplished using Markov Chain Monte Carlo.

Allows the estimation and downstream statistical analysis of the mitochondrial DNA Heteroplasmy calculated from single-cell datasets <https://github.com/ScialdoneLab/MitoHEAR/tree/master>.

Optimization for nonlinear objective and constraint functions. Linear or nonlinear equality and inequality constraints are allowed. It accepts the input parameters as a constrained matrix.

Density, distribution function, quantile function and random generation for the Nakagami distribution of Nakagami (1960) <doi:10.1016/B978-0-08-009306-2.50005-4>.

It estimates power and sample size for Partial Least Squares-based methods described in Andreella, et al., (2024), <doi:10.48550/arXiv.2403.10289>.

This package provides a simple function to bind a piped object to a placeholder symbol to enable complex function evaluation with the base R |> pipe.

Surveys to collect employment data so as to obtain data estimates on the number of employed people, the number of unemployed, and other employment indicators.

rpi-imager is graphical utility to easily provision and flash a memory card with an operating system image suitable for the Raspberry Pi single board computer.

This package provides the log-likelihoods with gradients from stan (Carpenter et al (2015), <doi:10.48550/arXiv.1509.07164>) needed for generalized log-likelihood estimation in nlmixr2 (Fidler et al (2019) <doi:10.1002/psp4.12445>). This is split of to reduce computational burden of recompiling rxode2 (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs the nlmixr2 models during estimation.

The Diceware method can be used to generate strong passphrases. In short, you roll a 6-faced dice 5 times in a row, the number obtained is matched against a dictionary of easily remembered words. By combining together 7 words thus generated, you obtain a password that is relatively easy to remember, but would take several millions years (on average) for a powerful computer to guess.

Get the category of content hosted by a domain. Use Shallalist <http://shalla.de/>, Virustotal (which provides access to lots of services) <https://www.virustotal.com/>, Alexa <https://aws.amazon.com/awis/>, DMOZ <https://curlie.org/>, University Domain list <https://github.com/Hipo/university-domains-list> or validated machine learning classifiers based on Shallalist data to learn about the kind of content hosted by a domain.

This package provides classes and statistical methods for large single-nucleotide polymorphism (SNP) association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

The R kernel for the Jupyter environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.

This package provides common functionality for the dynverse packages. dynverse is created to support the development, execution, and benchmarking of trajectory inference methods.

This package provides a collection of functions to help in the analysis of right-censored survival data. These extend the methods available in the survival package.

This package provides a ggplot2 extension for easy plotting of half-half geom combinations. Think half boxplot and half jitterplot, or half violinplot and half dotplot.

Phangorn is a package for phylogenetic analysis in R. It supports estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.

The goal of this script is to provide a fast and lightweight script to enable responsive web designs in browsers that don't support CSS3 Media Queries.

Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio.

This library provides Ruby qFFI bindings to the libsass library. This enables rendering SASS from Ruby code.

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.