Interface to the OpenGWAS database API <https://api.opengwas.io/api/>. Includes a wrapper to make generic calls to the API, plus convenience functions for specific queries.

Restore underlining numeric data from rating history graph of KGS (an online platform of the game of go, <http://www.gokgs.com/>). A shiny application is also provided.

This package provides three classes: Queue, PriorityQueue and Stack. Queue is just a "plain vanilla" FIFO queue; PriorityQueue orders items according to priority. Stack implements LIFO.

This package provides functions to collapse a tidy data frame into matrices in a data frame and expand a data frame of matrices into a tidy data frame.

This package provides a method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006) <DOI:10.1080/10629360600569246>.

Takes QC signal for each day and normalize metabolomic data that has been acquired in a certain period of time. At least three QC per day are required.

This package provides methods for performing genetic risk prediction from genotype data. You can use it to perform risk prediction for individuals, or for families with missing data.

Open Location Codes <http://openlocationcode.com/> are a Google-created standard for identifying geographic locations. olctools provides utilities for validating, encoding and decoding entries that follow this standard.

This package provides methods for spatial predictive modeling, especially for spatial distribution models. This includes algorithms for model fitting and prediction, as well as methods for model evaluation.

Perform tasks commonly encountered when preparing and analysing demographic data. Some functions are intended for end users, and others for developers. Includes functions for working with life tables.

Read, process, fit, and analyze photosynthetic gas exchange measurements. Documentation is provided by several vignettes; also see Lochocki, Salesse-Smith, & McGrath (2025) <doi:10.1111/pce.15501>.

In Shiny apps, it is sometimes useful to store information on a particular item in a tooltip. Prompter allows you to easily create such tooltips, using Hint.css'.

Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology, see Zang and Biondi (2015) <doi:10.1111/ecog.01335>.

This package provides numerous functions to fill data. These can be applied either to missing or skewed data. The functions are designed within the scope of Student Analytics.

This package provides tools for interactive data exploration built using shiny'. Includes apps for descriptive statistics, visualizing probability distributions, inferential statistics, linear regression, logistic regression and RFM analysis.

The x3p file format is specified in ISO standard 5436:2000 to describe 3d surface measurements. x3ptools allows reading, writing and basic modifications to the 3D surface measurements.

We provide a number of algorithms to estimate fundamental statistics including Fréchet mean and geometric median for manifold-valued data. Also, C++ header files are contained that implement elementary operations on manifolds such as Sphere, Grassmann, and others. See Bhattacharya and Bhattacharya (2012) <doi:10.1017/CBO9781139094764> if you are interested in statistics on manifolds, and Absil et al (2007, ISBN:9780691132983) on computational aspects of optimization on matrix manifolds.

This package creates a header only package to link to the CGAL (Computational Geometry Algorithms Library) header files in Rcpp'. There are a variety of potential uses for the software such as Hilbert sorting, K-D Tree nearest neighbors, and convex hull algorithms. For more information about how to use the header files, see the CGAL documentation at <https://www.cgal.org>. Currently downloads version 6.1 of the CGAL header files.

This package implements different performance measures for classification and ranking tasks. Area under curve (AUC), precision at a given recall, F-score for single and multiple classes are available.

ChIPComp implements a statistical method for quantitative comparison of multiple ChIP-seq datasets. It detects differentially bound sharp binding sites across multiple conditions considering matching control in ChIP-seq datasets.

This package implements general purpose tools, such as functions for sampling and basic manipulation of Brazilian lawsuits identification number. It also implements functions for text cleaning, such as accentuation removal.

In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics that are not provided by base R methods related to model fitting.

This package implements a parametric bootstrap test and a Kenward Roger modification of F-tests for linear mixed effects models and a parametric bootstrap test for generalized linear mixed models.

Lemon is a unit testing framework that enforces highly formal case-to-class and unit-to-method test construction. This enforcement can help focus concern on individual units of behavior.