This package provides a collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) <doi:10.1111/1440-1703.1275>.

Read, manipulate, and digitize landmark data, generate shape variables via Procrustes analysis for points, curves and surfaces, perform shape analyses, and provide graphical depictions of shapes and patterns of shape variation.

This package provides functions read a dataframe containing one or more International Classification of Diseases Tenth Revision codes per subject. They return original data with injury categorizations and severity scores added.

Select statistically similar research groups by backward selection using various robust algorithms, including a heuristic based on linear discriminant analysis, multiple heuristics based on the test statistic, and parallelized exhaustive search.

R API for Pathling', a tool for querying and transforming electronic health record data that is represented using the Fast Healthcare Interoperability Resources (FHIR) standard - see <https://pathling.csiro.au/docs>.

This package provides a project infrastructure with a focus on manuscript creation. Creates a project folder with a single command, containing subdirectories for specific components, templates for manuscripts, and so on.

Implementation of a KL-based (Kullback-Leibler) test for MCAR (Missing Completely At Random) in the context of missing data as introduced in Michel et al. (2021) <arXiv:2109.10150>.

Automated pain scoring from paw withdrawal tracking data. Based on Jones et al. (2020) "A machine-vision approach for automated pain measurement at millisecond timescales" <doi:10.7554/eLife.57258>.

This package provides a coding assistant using Perplexity's Large Language Models <https://www.perplexity.ai/> API. A set of functions and RStudio add-ins that aim to help R developers.

Latent space models for multivariate networks (multiplex) estimated via MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D Angelo et al. (2018) <arXiv:1807.03874>.

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.

Performing the hypothesis tests for the two sample problem based on order statistics and power comparisons. Calculate the test statistic, density, distribution function, quantile function, random number generation and others.

This package provides tools to perform some descriptive data analysis for assets. Manage the portfolio and capital of assets. It also downloads and organizes data from the Tehran Stock Exchange (TSE).

This package provides a suite of easy to use functions for collecting social media data and generating networks for analysis. Supports Mastodon, YouTube, Reddit and Web 1.0 data sources.

This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.

This package offers a quick and straight-forward way to explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.

This package provides tools to fit and predict with the high-dimensional principal fitted components model. This model is described by Cook, Forzani, and Rothman (2012) doi:10.1214/11-AOS962.

ExtRemes is a suite of functions for carrying out analyses on the extreme values of a process of interest; be they block maxima over long blocks or excesses over a high threshold.

This package provides a collection of perceptually uniform color maps made by Peter Kovesi (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the Centre for Exploration Targeting (CET).

This package provides functions used to build R packages. It locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.

This package provides R bindings to the Sundown Markdown rendering library (https://github.com/vmg/sundown). Markdown is a plain-text formatting syntax that can be converted to XHTML or other formats.

CZMQ Ruby bindings, based on the generated low-level FFI bindings of CZMQ. The focus of of CZTop is on being easy to use and providing first class support for security mechanisms.

An R interface for libeemd (Luukko, Helske, Räsänen, 2016) <doi:10.1007/s00180-015-0603-9>, a C library of highly efficient parallelizable functions for performing the ensemble empirical mode decomposition (EEMD), its complete variant (CEEMDAN), the regular empirical mode decomposition (EMD), and bivariate EMD (BEMD). Due to the possible portability issues CRAN version no longer supports OpenMP, but you can install OpenMP-supported version from GitHub: <https://github.com/helske/Rlibeemd/>.

This package provides formatting linting to roxygen2 tags. Linters report roxygen2 tags that do not conform to a standard style. These linters can be a helpful check for building more consistent documentation and to provide reminders about best practices or checks for typos. Default linting suites are provided for common style guides such as the one followed by the tidyverse', though custom linters can be registered by other packages or be custom-tailored to a specific package.