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r-rankprod 3.34.0
Propagated dependencies: r-rmpfr@1.1-0 r-gmp@0.7-5
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RankProd
Licenses: FSDG-compatible
Synopsis: Rank Product method for identifying differentially expressed genes with application in meta-analysis
Description:

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

rust-ahash 0.8.11
Channel: lauras-channel
Location: laura/packages/rust-common.scm (laura packages rust-common)
Home page: https://github.com/tkaitchuck/ahash
Licenses: Expat ASL 2.0
Synopsis: non-cryptographic hash function using AES-NI for high performance
Description:

This package provides a non-cryptographic hash function using AES-NI for high performance.

rust-memfd 0.6.4
Channel: lauras-channel
Location: laura/packages/rust-common.scm (laura packages rust-common)
Home page: https://github.com/lucab/memfd-rs
Licenses: Expat ASL 2.0
Synopsis: pure-Rust library to work with Linux memfd and sealing
Description:

This package provides a pure-Rust library to work with Linux memfd and sealing.

rust-wlink 0.0.4
Channel: hui
Location: hui/packages/embedded.scm (hui packages embedded)
Home page: https://github.com/ch32-rs/wlink
Licenses: Expat ASL 2.0
Synopsis: WCH-Link flash tool for WCH's RISC-V MCUs(CH32V, CH56X, CH57X, CH58X)
Description:

WCH-Link flash tool for WCH's RISC-V MCUs(CH32V, CH56X, CH57X, CH58X)

r-acroname 0.1.0
Propagated dependencies: r-stringr@1.5.1 r-readr@2.1.5 r-r-utils@2.13.0 r-purrr@1.0.4 r-magrittr@2.0.3 r-hunspell@3.0.6 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://cran.r-project.org/package=acroname
Licenses: GPL 3
Synopsis: Engine for Acronyms and Initialisms
Description:

This package provides a tool for generating acronyms and initialisms from arbitrary text input.

r-bayesmix 0.7-6
Propagated dependencies: r-rjags@4-17 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://statmath.wu.ac.at/~gruen/BayesMix/
Licenses: GPL 2 GPL 3
Synopsis: Bayesian Mixture Models with JAGS
Description:

Fits finite mixture models of univariate Gaussian distributions using JAGS within a Bayesian framework.

r-cumstats 1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cumstats
Licenses: GPL 3
Synopsis: Cumulative Descriptive Statistics
Description:

Cumulative descriptive statistics for (arithmetic, geometric, harmonic) mean, median, mode, variance, skewness and kurtosis.

r-clustgeo 2.1
Propagated dependencies: r-spdep@1.3-11 r-sp@2.2-0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ClustGeo
Licenses: GPL 2+
Synopsis: Hierarchical Clustering with Spatial Constraints
Description:

This package implements a Ward-like hierarchical clustering algorithm including soft spatial/geographical constraints.

r-codified 0.3.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-rlang@1.1.6 r-knitr@1.50 r-kableextra@1.4.0 r-dplyr@1.1.4 r-checkmate@2.3.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://ouhscbbmc.github.io/codified/
Licenses: Expat
Synopsis: Produce Standard/Formalized Demographics Tables
Description:

Augment clinical data with metadata to create output used in conventional publications and reports.

r-crossval 1.0.5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=crossval
Licenses: GPL 3+
Synopsis: Generic Functions for Cross Validation
Description:

This package contains generic functions for performing cross validation and for computing diagnostic errors.

r-hmptrees 1.4
Propagated dependencies: r-hmp@2.0.1 r-foreach@1.5.2 r-doparallel@1.0.17 r-dirmult@0.1.3-5 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: https://cran.r-project.org/package=HMPTrees
Licenses: ASL 2.0
Synopsis: Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
Description:

This package provides tools to model, compare, and visualize populations of taxonomic tree objects.

r-mapstats 3.1
Propagated dependencies: r-ttutils@1.0-1.1 r-survey@4.4-2 r-sp@2.2-0 r-sf@1.0-21 r-reshape2@1.4.4 r-rcolorbrewer@1.1-3 r-lattice@0.22-7 r-hmisc@5.2-3 r-colorspace@2.1-1 r-classint@0.4-11
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=mapStats
Licenses: GPL 2+
Synopsis: Geographic Display of Survey Data Statistics
Description:

Automated calculation and visualization of survey data statistics on a color-coded (choropleth) map.

r-purrrlyr 0.0.8
Propagated dependencies: r-rcpp@1.0.14 r-purrr@1.0.4 r-magrittr@2.0.3 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/hadley/purrrlyr
Licenses: GPL 3 FSDG-compatible
Synopsis: Tools at the Intersection of 'purrr' and 'dplyr'
Description:

Some functions at the intersection of dplyr and purrr that formerly lived in purrr'.

r-quadroot 0.2.1
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=QuadRoot
Licenses: GPL 2
Synopsis: Quadratic Root for any Quadratic Equation
Description:

It will assist the user to find simple quadratic roots from any quadratic equation.

r-sciviews 0.9-13.2
Propagated dependencies: r-ellipse@0.5.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/SciViews/SciViews
Licenses: GPL 2
Synopsis: SciViews - Main package
Description:

This package provides functions to install SciViews additions to R, and more tools.

r-stagepop 1.1-2
Propagated dependencies: r-pbsddesolve@1.13.4 r-desolve@1.40
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/HelenKettle/StagePop
Licenses: GPL 3 FSDG-compatible
Synopsis: Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time
Description:

This package provides facilities to implement and run population models of stage-structured species...

r-apalyzer 1.22.0
Propagated dependencies: r-variantannotation@1.54.1 r-tidyr@1.3.1 r-summarizedexperiment@1.38.1 r-rtracklayer@1.68.0 r-rsubread@2.22.1 r-rsamtools@2.24.0 r-repmis@0.5 r-hybridmtest@1.52.0 r-ggrepel@0.9.6 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-genomicfeatures@1.60.0 r-genomicalignments@1.44.0 r-dplyr@1.1.4 r-deseq2@1.48.1
Channel: guix-bioc
Location: guix-bioc/packages/a.scm (guix-bioc packages a)
Home page: https://github.com/RJWANGbioinfo/APAlyzer/
Licenses: LGPL 3
Synopsis: toolkit for APA analysis using RNA-seq data
Description:

Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.

r-sctensor 2.17.0
Propagated dependencies: r-visnetwork@2.1.2 r-tagcloud@0.6 r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-schex@1.22.0 r-s4vectors@0.46.0 r-rtensor@1.4.8 r-rsqlite@2.3.11 r-rmarkdown@2.29 r-reactomepa@1.52.0 r-reactome-db@1.92.0 r-plotrix@3.8-4 r-plotly@4.10.4 r-outliers@0.15 r-nntensor@1.3.0 r-meshr@2.14.0 r-meshdbi@1.44.0 r-knitr@1.50 r-igraph@2.1.4 r-heatmaply@1.5.0 r-gostats@2.74.0 r-ggplot2@3.5.2 r-dose@4.2.0 r-crayon@1.5.3 r-checkmate@2.3.2 r-cctensor@1.0.2 r-category@2.74.0 r-biocstyle@2.36.0 r-biocmanager@1.30.25 r-annotationhub@3.16.0 r-annotationdbi@1.70.0 r-abind@1.4-8
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://bioconductor.org/packages/scTensor
Licenses: Artistic License 2.0
Synopsis: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Description:

The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.

r-switchde 1.34.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-ggplot2@3.5.2 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://github.com/kieranrcampbell/switchde
Licenses: GPL 2+
Synopsis: Switch-like differential expression across single-cell trajectories
Description:

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

r-ygs98cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/y.scm (guix-bioc packages y)
Home page: https://bioconductor.org/packages/ygs98cdf
Licenses: LGPL 2.0+
Synopsis: ygs98cdf
Description:

This package provides a package containing an environment representing the YG_S98.cdf file.

r-gseabase 1.70.0
Propagated dependencies: r-annotate@1.86.0 r-annotationdbi@1.70.0 r-biobase@2.68.0 r-biocgenerics@0.54.0 r-graph@1.86.0 r-xml@3.99-0.18
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/GSEABase
Licenses: Artistic License 2.0
Synopsis: Gene set enrichment data structures and methods
Description:

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

r-bigmelon 1.34.0
Propagated dependencies: r-biobase@2.68.0 r-biocgenerics@0.54.0 r-gdsfmt@1.44.0 r-geoquery@2.76.0 r-illuminaio@0.50.0 r-methylumi@2.54.0 r-minfi@1.54.1 r-watermelon@2.14.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/bigmelon/
Licenses: GPL 3
Synopsis: Illumina methylation array analysis for large experiments
Description:

This package provides methods for working with Illumina arrays using the gdsfmt package.

r-lazyeval 0.2.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/hadley/lazyeval
Licenses: GPL 3+
Synopsis: Lazy (non-standard) evaluation in R
Description:

This package provides the tools necessary to do non-standard evaluation (NSE) in R.

r-grimport 0.9-7
Dependencies: ghostscript@9.56.1
Propagated dependencies: r-xml@3.99-0.18
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/grImport
Licenses: GPL 2+
Synopsis: Convert, import, and draw PostScript pictures
Description:

This package provides functions for converting, importing, and drawing PostScript pictures in R plots.

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