_            _    _        _         _
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      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-charlatan 0.6.2
Propagated dependencies: r-whisker@0.4.1 r-tibble@3.3.0 r-r6@2.6.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://docs.ropensci.org/charlatan/
Licenses: Expat
Build system: r
Synopsis: Make Fake Data
Description:

Make fake data that looks realistic, supporting addresses, person names, dates, times, colors, coordinates, currencies, digital object identifiers ('DOIs'), jobs, phone numbers, DNA sequences, doubles and integers from distributions and within a range.

r-coglyphr 1.1.0
Propagated dependencies: r-sp@2.2-0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/mutopsy/coglyphr
Licenses: GPL 3
Build system: r
Synopsis: Compute Glyph Centers of Gravity from Image Data
Description:

Computes the center of gravity (COG) of character-like binary images using three different methods. This package provides functions for estimating stroke-based, contour-based, and potential energy-based COG. It is useful for analyzing glyph structure in areas such as visual cognition research and font development. The contour-based method was originally proposed by Kotani et al. (2004) <https://ipsj.ixsq.nii.ac.jp/records/36793> and Kotani (2011) <https://shonan-it.repo.nii.ac.jp/records/2000243>, while the potential energy-based method was introduced by Kotani et al. (2006) <doi:10.11371/iieej.35.296>.

r-crossvalidate 2.3.5
Propagated dependencies: r-oompabase@3.2.10 r-modeler@3.4.9
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: http://oompa.r-forge.r-project.org
Licenses: ASL 2.0
Build system: r
Synopsis: Classes and Methods for Cross Validation of "Class Prediction" Algorithms
Description:

Defines classes and methods to cross-validate various binary classification algorithms used for "class prediction" problems.

r-comtradr 1.0.5
Propagated dependencies: r-stringr@1.6.0 r-rlang@1.1.6 r-readr@2.1.6 r-rappdirs@0.3.3 r-purrr@1.2.0 r-poorman@0.2.7 r-memoise@2.0.1 r-lubridate@1.9.4 r-lifecycle@1.0.4 r-httr2@1.2.1 r-fs@1.6.6 r-cli@3.6.5 r-cachem@1.1.0 r-askpass@1.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://docs.ropensci.org/comtradr/
Licenses: GPL 3
Build system: r
Synopsis: Interface with the United Nations Comtrade API
Description:

Interface with and extract data from the United Nations Comtrade API <https://comtradeplus.un.org/>. Comtrade provides country level shipping data for a variety of commodities, these functions allow for easy API query and data returned as a tidy data frame.

r-comato 1.1
Propagated dependencies: r-xml@3.99-0.20 r-matrix@1.7-4 r-lattice@0.22-7 r-igraph@2.2.1 r-gdata@3.0.1 r-clustersim@0.51-6 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=comato
Licenses: GPL 3
Build system: r
Synopsis: Analysis of Concept Maps and Concept Landscapes
Description:

This package provides methods for the import/export and automated analysis of concept maps and concept landscapes (sets of concept maps).

r-corenlp 0.4-3
Propagated dependencies: r-xml@3.99-0.20 r-rjava@1.0-11
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=coreNLP
Licenses: GPL 2
Build system: r
Synopsis: Wrappers Around Stanford CoreNLP Tools
Description:

This package provides a minimal interface for applying annotators from the Stanford CoreNLP java library. Methods are provided for tasks such as tokenisation, part of speech tagging, lemmatisation, named entity recognition, coreference detection and sentiment analysis.

r-custosascensor 0.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CustosAscensor
Licenses: GPL 2+
Build system: r
Synopsis: Costs Allocation for the Installation of an Elevator
Description:

Calculate the distribution of costs for the installation of an elevator based on the different distribution rules.

r-convertbcd 1.0
Propagated dependencies: r-rmpfr@1.1-2 r-gmp@0.7-5
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=convertBCD
Licenses: LGPL 3
Build system: r
Synopsis: Convert Decimal to Binary-Coded Decimal (BCD) Form and Vice Versa
Description:

Convert BCD (raw bytes) to decimal numbers and vice versa. BCD format is used to preserve decimals exactly, as opposed to the binary rounding errors inherent in "numeric" or "floating-point" formats.

r-ciee 0.1.1
Propagated dependencies: r-survival@3.8-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CIEE
Licenses: GPL 2
Build system: r
Synopsis: Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations
Description:

In many studies across different disciplines, detailed measures of the variables of interest are available. If assumptions can be made regarding the direction of effects between the assessed variables, this has to be considered in the analysis. The functions in this package implement the novel approach CIEE (causal inference using estimating equations; Konigorski et al., 2018, <DOI:10.1002/gepi.22107>) for estimating and testing the direct effect of an exposure variable on a primary outcome, while adjusting for indirect effects of the exposure on the primary outcome through a secondary intermediate outcome and potential factors influencing the secondary outcome. The underlying directed acyclic graph (DAG) of this considered model is described in the vignette. CIEE can be applied to studies in many different fields, and it is implemented here for the analysis of a continuous primary outcome and a time-to-event primary outcome subject to censoring. CIEE uses estimating equations to obtain estimates of the direct effect and robust sandwich standard error estimates. Then, a large-sample Wald-type test statistic is computed for testing the absence of the direct effect. Additionally, standard multiple regression, regression of residuals, and the structural equation modeling approach are implemented for comparison.

r-czechrates 0.2.5
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-readr@2.1.6 r-magrittr@2.0.4 r-httr@1.4.7 r-dplyr@1.1.4 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/jla-data/czechrates
Licenses: Expat
Build system: r
Synopsis: Czech Interest & Foreign Exchange Rates
Description:

Interface to interest and foreign exchange rates published by the Czech National Bank.

r-chippcr 1.0-2
Propagated dependencies: r-signal@1.8-1 r-shiny@1.11.1 r-robustbase@0.99-6 r-rfit@0.27.0 r-quantreg@6.1 r-ptw@1.9-16 r-outliers@0.15 r-mass@7.3-65 r-lmtest@0.9-40
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/PCRuniversum/chipPCR
Licenses: GPL 3
Build system: r
Synopsis: Toolkit of Helper Functions to Pre-Process Amplification Data
Description:

This package provides a collection of functions to pre-process amplification curve data from polymerase chain reaction (PCR) or isothermal amplification reactions. Contains functions to normalize and baseline amplification curves, to detect both the start and end of an amplification reaction, several smoothers (e.g., LOWESS, moving average, cubic splines, Savitzky-Golay), a function to detect false positive amplification reactions and a function to determine the amplification efficiency. Quantification point (Cq) methods include the first (FDM) and second approximate derivative maximum (SDM) methods (calculated by a 5-point-stencil) and the cycle threshold method. Data sets of experimental nucleic acid amplification systems ('VideoScan HCU', capillary convective PCR (ccPCR)) and commercial systems are included. Amplification curves were generated by helicase dependent amplification (HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used. For more information see: Roediger et al. (2015) <doi:10.1093/bioinformatics/btv205>.

r-condmvnorm 2025.1
Propagated dependencies: r-mvtnorm@1.3-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=condMVNorm
Licenses: GPL 2
Build system: r
Synopsis: Conditional Multivariate Normal Distribution
Description:

Computes conditional multivariate normal densities, probabilities, and random deviates.

r-cgmanalyzer 1.3.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CGManalyzer
Licenses: Expat
Build system: r
Synopsis: Continuous Glucose Monitoring Data Analyzer
Description:

This package contains all of the functions necessary for the complete analysis of a continuous glucose monitoring study and can be applied to data measured by various existing CGM devices such as FreeStyle Libre', Glutalor', Dexcom and Medtronic CGM'. It reads a series of data files, is able to convert various formats of time stamps, can deal with missing values, calculates both regular statistics and nonlinear statistics, and conducts group comparison. It also displays results in a concise format. Also contains two unique features new to CGM analysis: one is the implementation of strictly standard mean difference and the class of effect size; the other is the development of a new type of plot called antenna plot. It corresponds to Zhang XD'(2018)<doi:10.1093/bioinformatics/btx826>'s article CGManalyzer: an R package for analyzing continuous glucose monitoring studies'.

r-ctshiny2 0.1.0
Propagated dependencies: r-shiny@1.11.1 r-rpart-plot@3.1.4 r-rpart@4.1.24 r-rmarkdown@2.30 r-rhandsontable@0.3.8 r-party@1.3-18 r-e1071@1.7-16 r-dplyr@1.1.4 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CTShiny2
Licenses: GPL 2
Build system: r
Synopsis: Interactive Document for Working with Classification Tree Analysis
Description:

An interactive document on the topic of classification tree analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://kartikeyab.shinyapps.io/CTShiny/>.

r-coneproj 1.23
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=coneproj
Licenses: GPL 2+
Build system: r
Synopsis: Primal or Dual Cone Projections with Routines for Constrained Regression
Description:

Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems. See Mary C. Meyer (2013)<doi:10.1080/03610918.2012.659820> for more details.

r-controltest 1.1.0
Propagated dependencies: r-survival@3.8-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=controlTest
Licenses: GPL 3
Build system: r
Synopsis: Quantile Comparison for Two-Sample Right-Censored Survival Data
Description:

Nonparametric two-sample procedure for comparing survival quantiles.

r-cloudos 0.4.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-rappdirs@0.3.3 r-jsonlite@2.0.0 r-httr@1.4.7 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/lifebit-ai/cloudos
Licenses: Expat
Build system: r
Synopsis: R Client Library for CloudOS
Description:

The CloudOS client library for R makes it easy to interact with CloudOS in the R environment for analysis.

r-canvasxpress-data 1.34.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/neuhausi/canvasXpress.data
Licenses: GPL 3
Build system: r
Synopsis: Datasets for the 'canvasXpress' Package
Description:

This package contains the prepared data that is needed for the shiny application examples in the canvasXpress package. This package also includes datasets used for automated testthat tests. Scotto L, Narayan G, Nandula SV, Arias-Pulido H et al. (2008) <doi:10.1002/gcc.20577>. Davis S, Meltzer PS (2007) <doi:10.1093/bioinformatics/btm254>.

r-colorblindness 0.1.9
Propagated dependencies: r-gtable@0.3.6 r-gridgraphics@0.5-1 r-ggplot2@4.0.1 r-cowplot@1.2.0 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=colorBlindness
Licenses: GPL 2+
Build system: r
Synopsis: Safe Color Set for Color Blindness
Description:

Provide the safe color set for color blindness, the simulator of protanopia, deuteranopia. The color sets are collected from: Wong, B. (2011) <doi:10.1038/nmeth.1618>, and <http://mkweb.bcgsc.ca/biovis2012/>. The simulations of the appearance of the colors to color-deficient viewers were based on algorithms in Vienot, F., Brettel, H. and Mollon, J.D. (1999) <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>. The cvdPlot() function to generate ggplot grobs of simulations were modified from <https://github.com/clauswilke/colorblindr>.

r-cladorcpp 0.15.1
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: http://phylo.wikidot.com/biogeobears
Licenses: GPL 2+
Build system: r
Synopsis: C++ Implementations of Phylogenetic Cladogenesis Calculations
Description:

Various cladogenesis-related calculations that are slow in pure R are implemented in C++ with Rcpp. These include the calculation of the probability of various scenarios for the inheritance of geographic range at the divergence events on a phylogenetic tree, and other calculations necessary for models which are not continuous-time markov chains (CTMC), but where change instead occurs instantaneously at speciation events. Typically these models must assess the probability of every possible combination of (ancestor state, left descendent state, right descendent state). This means that there are up to (# of states)^3 combinations to investigate, and in biogeographical models, there can easily be hundreds of states, so calculation time becomes an issue. C++ implementation plus clever tricks (many combinations can be eliminated a priori) can greatly speed the computation time over naive R implementations. CITATION INFO: This package is the result of my Ph.D. research, please cite the package if you use it! Type: citation(package="cladoRcpp") to get the citation information.

r-congrevelamsdell2016 1.0.3
Propagated dependencies: r-ternary@2.3.6
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/ms609/CongreveLamsdell2016
Licenses: GPL 2+
Build system: r
Synopsis: Distance Metrics for Trees Generated by Congreve and Lamsdell
Description:

Includes the 100 datasets simulated by Congreve and Lamsdell (2016) <doi:10.1111/pala.12236>, and analyses of the partition and quartet distance of reconstructed trees from the generative tree, as analysed by Smith (2019) <doi:10.1098/rsbl.2018.0632>.

r-ctshiny 0.1.0
Propagated dependencies: r-shiny@1.11.1 r-rpart-plot@3.1.4 r-rpart@4.1.24 r-rmarkdown@2.30 r-rhandsontable@0.3.8 r-party@1.3-18 r-e1071@1.7-16 r-dplyr@1.1.4 r-caret@7.0-1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CTShiny
Licenses: GPL 2
Build system: r
Synopsis: Interactive Document for Working with Classification Tree Analysis
Description:

An interactive document on the topic of classification tree analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://kartikeyab.shinyapps.io/CTShiny/>.

r-compdb 0.0.1
Propagated dependencies: r-withr@3.0.2 r-pkgbuild@1.4.8 r-cli@3.6.5 r-callr@3.7.6
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/cyianor/r-compdb
Licenses: Expat
Build system: r
Synopsis: Generate Compilation Database for Use with 'Clang' Tools
Description:

Many modern C/C++ development tools in the clang toolchain, such as clang-tidy or clangd', rely on the presence of a compilation database in JSON format <https://clang.llvm.org/docs/JSONCompilationDatabase.html>. This package temporarily injects additional build flags into the R build process to generate such a compilation database.

r-carbayesdata 3.0
Propagated dependencies: r-sf@1.0-23
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CARBayesdata
Licenses: GPL 2+
Build system: r
Synopsis: Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
Description:

Spatio-temporal data from Scotland used in the vignettes accompanying the CARBayes (spatial modelling) and CARBayesST (spatio-temporal modelling) packages. Most of the data relate to the set of 271 Intermediate Zones (IZ) that make up the 2001 definition of the Greater Glasgow and Clyde health board.

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Total results: 68658