Allows the user to generate bootstrap cards within R markdown documents. Intended for use in conjunction with R markdown HTML outputs and other formats that support the bootstrap 4 library.

Calculates correlation of variables and displays the results graphically. Included panel functions can display points, shading, ellipses, and correlation values with confidence intervals. See Friendly (2002) <doi:10.1198/000313002533>.

Implementation of case-control data analysis using likelihood ratio approaches and logistic regression for the classification of variants of uncertain significance (VUS) in breast, ovarian, or custom cancer susceptibility genes.

Calculation of AHP (Analytic Hierarchy Process - <http://en.wikipedia.org/wiki/Analytic_hierarchy_process>) with classic and fuzzy weights based on Saaty's pairwise comparison method for determination of weights.

This package provides one-liner functions for common legend and guide operations in ggplot2'. Simplifies legend positioning, styling, wrapping, and collection across multi-panel plots created with patchwork or cowplot'.

Read and manipulate landmark data, generate shape variables via Procrustes analysis for points, curves and surfaces, perform shape analyses, and provide graphical depictions of shapes and patterns of shape variation.

This package provides pipe-friendly (%>%) wrapper functions for MASS::mvrnorm() to create simulated multivariate data sets with groups of variables with different degrees of variance, covariance, and effect size.

This package provides a data package containing public domain information on requests made by the MuckRock (https://www.muckrock.com/) project under the United States Freedom of Information Act.

This package provides a bundle of functions for modifying MAESTRA/MAESPA input files,reading output files, and visualizing the stand in 3D. Handy for running sensitivity analyses, scenario analyses, etc.

Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by debug package.

This package provides an implementation of methods for multivariate multiple regression with adaptive shrinkage priors as described in F. Morgante et al (2023) <doi:10.1371/journal.pgen.1010539>.

This package contains auxiliary routines for influx software. This packages is not intended to be used directly. Influx was published here: Sokol et al. (2012) <doi:10.1093/bioinformatics/btr716>.

This package provides tools for visual inference. Generate null data sets and null plots using permutation and simulation. Calculate distance metrics for a lineup, and examine the distributions of metrics.

Markov chain Monte Carlo diagnostic plots. The purpose of the package is to combine existing tools from the coda and lattice packages, and make it easy to adjust graphical details.

This package provides functions to patch specials in .dvi files, or entries in .synctex files. Works with concordance=TRUE in Sweave, knitr or R Markdown to link sources to previews.

Simulate the dynamic of wolf populations using a specific Individual-Based Model (IBM) compiled in C, see Chapron et al. (2016) <doi:10.1016/j.ecolmodel.2016.08.012>.

Plots matrices of colours as grids of coloured squares - aka heatmaps, guaranteeing legible row and column names, without transformation of values, without re-ordering rows or columns, and without dendrograms.

This package produces various measures of expected treatment effect heterogeneity under an assumption of homogeneity across subgroups. Graphical presentations are created to compare these expected differences with the observed differences.

This package implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

This package provides functions that simplify calls to the Skilljar API. See <https://api.skilljar.com/docs/> for documentation on the Skilljar API. This package is not supported by Skilljar'.

Simulation of random vectors from truncated multivariate normal and t distributions based on the algorithms proposed by Yifang Li and Sujit K. Ghosh (2015) <doi:10.1080/15598608.2014.996690>.

Base R sometimes requires verbose statements for simple, often recurring tasks, such as printing text without trailing space, ending with newline. This package aims at providing shorthands for such tasks.

This package provides tidyverse methods for wrangling and analyzing Earth Engine <https://earthengine.google.com/> data. These methods help the user with filtering, joining and summarising Earth Engine image collections.

Evaluation of alternatives based on multiple criteria using weighted technique for Order preference by similarity to an ideal solution method. Reference: Hwang CL. (1981, ISBN:978-3-540-10558-9).