Reply is a lightweight, extensible REPL for Perl. It is plugin-based (see Reply::Plugin), and through plugins supports many advanced features such as coloring and pretty printing, readline support, and pluggable commands.

Namae (名前) is a parser for human names. It recognizes personal names of various cultural backgrounds and tries to split them into their component parts (e.g., given and family names, honorifics etc.).

Selected Affymetrix and Illlumina SNP data for HapMap subjects. Data provided by the Center for Inherited Disease Research at Johns Hopkins University and the Broad Institute of MIT and Harvard University.

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

API for using episensr', Basic sensitivity analysis of the observed relative risks adjusting for unmeasured confounding and misclassification of the exposure/outcome, or both. See <https://cran.r-project.org/package=episensr>.

Handy frameworks, such as error handling and log generation, for batch scripts. Use case: in scripts running in remote servers, set error handling mechanism for downloading and uploading and record operation log.

An interactive document on the topic of classification tree analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://kartikeyab.shinyapps.io/CTShiny/>.

Client for the Open Citations Corpus (<http://opencitations.net/>). Includes a set of functions for getting one identifier type from another, as well as getting references and citations for a given identifier.

Calculates permutation tests that can be powerful for comparing two groups with some positive but many zero responses (see Follmann, Fay, and Proschan <DOI:10.1111/j.1541-0420.2008.01131.x>).

This package provides tools for connecting to CHILDES', an open repository for transcripts of parent-child interaction. For more information on the underlying data, see <https://langcog.github.io/childes-db-website/>.

This package provides simple and efficient methods to detect column-level data drift between reference and target datasets. Designed for monitoring tabular data pipelines and machine learning inputs using statistical distance measures.

Move elements between containers in Shiny without explicitly using JavaScript'. It can be used to build custom inputs or to change the positions of user interface elements like plots or tables.

Forecasting univariate time series with different decomposition based time delay neural network models. For method details see Yu L, Wang S, Lai KK (2008). <doi:10.1016/j.eneco.2008.05.003>.

Forecasting univariate time series with ensemble empirical mode decomposition (EEMD) with long short-term memory (LSTM). For method details see Jaiswal, R. et al. (2022). <doi:10.1007/s00521-021-06621-3>.

Density, distribution function, quantile function and random generation for the Kumaraswamy Complementary Weibull Geometric (Kw-CWG) lifetime probability distribution proposed in Afify, A.Z. et al (2017) <doi:10.1214/16-BJPS322>.

Univariate agglomerative hierarchical clustering with a comprehensive list of choices of a linkage function in O(n*log n) time. The better algorithmic time complexity is paired with an efficient C++ implementation.

This package provides a collection of functions for creating color schemes. Used to support packages and scripts written by researchers at the United States Geological Survey (USGS) Idaho National Laboratory Project Office.

This package provides functions for summarizing, visualizing, and analyzing Likert-scale survey data. Includes support for computing descriptive statistics, Relative Importance Index (RII), reliability analysis (Cronbach's Alpha), and response distribution plots.

Age-specific mortality rates are estimated and projected using the Kannisto, Lee-Carter and related methods as described in Sevcikova et al. (2016) <doi:10.1007/978-3-319-26603-9_15>.

This is the core package offering a portal to the many packages universe. It includes functions to help researchers access, work across, and maintain ensembles of datasets on global governance called datacubes.

Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This method for fitting such models is described in Hepler and Erhardt (2021) "A spatiotemporal model for multivariate occupancy data".

Implementation of Multiple Comparison Procedures with Modeling (MCP-Mod) procedure with bias-corrected estimators and second-order covariance matrices as described in Diniz, Gallardo and Magalhaes (2023) <doi:10.1002/pst.2303>.

This package provides tools to simulate morphological traits along phylogenetic trees with branch lengths representing evolutionary distance or time. Includes functions for visualizing evolutionary processes along trees and within morphological character matrices.

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).