This package provides ISO language, territory, currency, script and character codes. It provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.

This package implements an API for accessing the Domain Name Service (DNS) resolver service via the standard libresolv system library (whose API is often available directly via the standard libc C library) on Unix systems.

Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

Testing individual SNPs, as well as arbitrarily large groups of SNPs in GWA studies, using a joint model of all SNPs. The method controls the FWER, and provides an automatic, data-driven refinement of the SNP clusters to smaller groups or single markers.

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

This package provides a collection of functions to extract citation information from R packages and to deal with files in citation file format (<https://citation-file-format.github.io/>), extending the functionality already provided by the citation() function in the utils package.

This package provides the datasets from Efron & Hastie (2016, ISBN: 9781108107952), "Computer Age Statistical Inference: Algorithms, Evidence, and Data Science", in an accessible R format for those who want to use them for study or to try to reproduce analyses from the book.

Have you ever been tempted to create roxygen2'-style documentation comments for one of your functions that was not part of one of your packages (yet)? This is exactly what this package is about: running roxygen2 on (chunks of) a single code file.

Robust distance-based methods applied to matrices and data frames, producing distance matrices that can be used as input for various visualization techniques such as graphs, heatmaps, or multidimensional scaling configurations. See Boj and Grané (2024) <doi:10.1016/j.seps.2024.101992>.

This package provides functions for the Bayesian analysis of extreme value models, using Markov chain Monte Carlo methods. Allows the construction of both uninformative and informed prior distributions for common statistical models applied to extreme event data, including the generalized extreme value distribution.

Special functions that enhance other mixed effect model packages by creating overlayed, reduced rank, and reduced model matrices together with multiple data sets to practice the use of these models. For more details see Covarrubias-Pazaran (2016) <doi:10.1371/journal.pone.0156744>.

An interface to the core Familias functions which are programmed in C++. The implementation is described in Egeland, Mostad and Olaisen (1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad (2016) <doi:10.1016/j.fsigen.2016.04.005>.

Statistical analysis of monthly background checks of gun purchases for the New York Times story "What Drives Gun Sales: Terrorism, Obama and Calls for Restrictions" at <https://www.nytimes.com/interactive/2015/12/10/us/gun-sales-terrorism-obama-restrictions.html> is provided.

An extension of ggplot2 to provide quiver plots to visualise vector fields. This functionality is implemented using a geom to produce a new graphical layer, which allows aesthetic options. This layer can be overlaid on a map to improve visualisation of mapped data.

Fit joint models of survival and multivariate longitudinal data. The longitudinal data is specified by generalised linear mixed models. The joint models are fit via maximum likelihood using an approximate expectation maximisation algorithm. Bernhardt (2015) <doi:10.1016/j.csda.2014.11.011>.

This package provides functions that make it easy to reveal ggplot2 graphs incrementally. The functions take a plot produced with ggplot2 and return a list of plots showing data incrementally by panels, layers, groups, the values in an axis or any arbitrary aesthetic.

Enable user to find the IP addresses which are used as VPN anonymizer, open proxies, web proxies and Tor exits. The package lookup the proxy IP address from IP2Proxy BIN Data file. You may visit <https://lite.ip2location.com> for free database download.

This package provides string similarity calculations inspired by the Python thefuzz package. Compare strings by edit distance, similarity ratio, best matching substring, ordered token matching and set-based token matching. A range of edit distance measures are available thanks to the stringdist package.

This package provides tools to retrieve and summarize taxonomic information and synonymy data for reptile species using data scraped from The Reptile Database website (<https://reptile-database.reptarium.cz/>). Outputs include clean and structured data frames useful for ecological, evolutionary, and conservation research.

This package provides tools to retrieve and summarize taxonomic information and synonymy data for reptile species using data scraped from The Reptile Database website (<https://reptile-database.reptarium.cz/>). Outputs include clean and structured data frames useful for ecological, evolutionary, and conservation research.

This package implements the computation of discrepancy statistics summarizing differences between the density of imputed and observed values and the construction of weights to balance covariates that are part of the missing data mechanism as described in Marbach (2021) <arXiv:2107.05427>.

This package contains data from the May 2021 Occupational Employment and Wage Statistics data release from the U.S. Bureau of Labor Statistics. The dataset covers employment and wages across occupations, industries, states, and at the national level. Metropolitan data is not included.