Fetch statistics about views, downloads and data volume from Zenodo deposits. The package collects a Zenodo (<https://zenodo.org>) deposit file information, respecting the website scrapping policies.

Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

This package provides classes and statistical methods for large single-nucleotide polymorphism (SNP) association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

This package provides a ggplot2 extension for easy plotting of half-half geom combinations. Think half boxplot and half jitterplot, or half violinplot and half dotplot.

This package provides common functionality for the dynverse packages. dynverse is created to support the development, execution, and benchmarking of trajectory inference methods.

The R kernel for the Jupyter environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.

This package provides a collection of functions to help in the analysis of right-censored survival data. These extend the methods available in the survival package.

Phangorn is a package for phylogenetic analysis in R. It supports estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.

The goal of this script is to provide a fast and lightweight script to enable responsive web designs in browsers that don't support CSS3 Media Queries.

Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio.

This library provides Ruby qFFI bindings to the libsass library. This enables rendering SASS from Ruby code.

Get the category of content hosted by a domain. Use Shallalist <http://shalla.de/>, Virustotal (which provides access to lots of services) <https://www.virustotal.com/>, Alexa <https://aws.amazon.com/awis/>, DMOZ <https://curlie.org/>, University Domain list <https://github.com/Hipo/university-domains-list> or validated machine learning classifiers based on Shallalist data to learn about the kind of content hosted by a domain.

The Diceware method can be used to generate strong passphrases. In short, you roll a 6-faced dice 5 times in a row, the number obtained is matched against a dictionary of easily remembered words. By combining together 7 words thus generated, you obtain a password that is relatively easy to remember, but would take several millions years (on average) for a powerful computer to guess.

This package provides the log-likelihoods with gradients from stan (Carpenter et al (2015), <doi:10.48550/arXiv.1509.07164>) needed for generalized log-likelihood estimation in nlmixr2 (Fidler et al (2019) <doi:10.1002/psp4.12445>). This is split of to reduce computational burden of recompiling rxode2 (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs the nlmixr2 models during estimation.

Building interactive web applications with R is incredibly easy with shiny'. Behind the scenes, shiny builds a reactive graph that can quickly become intertwined and difficult to debug. reactlog (Schloerke 2019) <doi:10.5281/zenodo.2591517> provides a visual insight into that black box of shiny reactivity by constructing a directed dependency graph of the application's reactive state at any time point in a reactive recording.

R functions to read EURING data and analyse re-encounter data of birds marked by metal rings. For a tutorial, go to <doi:10.1080/03078698.2014.933053>.

Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-based Shiny application related to this package, see <https://implement.shinyapps.io/bayesess/>.

This package provides a set of common functions to be used for displaying messages, checking variables, finding absolute paths, starting applications, etc. More functions will be added later.

This package provides iterators for combinations, permutations, subsets, and Cartesian product, which allow one to go through all elements without creating a huge set of all possible values.

Shiny app for creating interactive consort flow diagrams and other types of flow diagrams, see Moher, Schulz and Altman (2001) <doi:10.1016/S0140-6736(00)04337-3>.

Implementation of Hurst exponent estimators based on complex-valued lifting wavelet energy from Knight, M. I and Nunes, M. A. (2018) <doi:10.1007/s11222-018-9820-8>.

Works as a virtual CRAN snapshot for source packages. It automatically downloads and installs tar.gz files with dependencies, all of which were available on a specific day.