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   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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r-srs 0.2.3
Propagated dependencies: r-vegan@2.7-2 r-shinycssloaders@1.1.0 r-shinybusy@0.3.3 r-shiny@1.11.1 r-dt@0.34.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SRS
Licenses: CC-BY-SA 4.0
Build system: r
Synopsis: Scaling with Ranked Subsampling
Description:

Analysis of species count data in ecology often requires normalization to an identical sample size. Rarefying (random subsampling without replacement), which is a popular method for normalization, has been widely criticized for its poor reproducibility and potential distortion of the community structure. In the context of microbiome count data, researchers explicitly advised against the use of rarefying. An alternative to rarefying is scaling with ranked subsampling (SRS). SRS consists of two steps. In the first step, the total counts for all OTUs (operational taxonomic units) or species in each sample are divided by a scaling factor chosen in such a way that the sum of the scaled counts Cscaled equals Cmin. In the second step, the non-integer Cscaled values are converted into integers by an algorithm that we dub ranked subsampling. The Cscaled value for each OTU or species is split into the integer part Cint (Cint = floor(Cscaled)) and the fractional part Cfrac (Cfrac = Cscaled - Cints). Since the sum of Cint is smaller or equal to Cmin, additional delta C = Cmin - the sum of Cint counts have to be added to the library to reach the total count of Cmin. This is achieved as follows. OTUs are ranked in the descending order of their Cfrac values. Beginning with the OTU of the highest rank, single count per OTU is added to the normalized library until the total number of added counts reaches delta C and the sum of all counts in the normalized library equals Cmin. When the lowest Cfrag involved in picking delta C counts is shared by several OTUs, the OTUs used for adding a single count to the library are selected in the order of their Cint values. This selection minimizes the effect of normalization on the relative frequencies of OTUs. OTUs with identical Cfrag as well as Cint are sampled randomly without replacement. See Beule & Karlovsky (2020) <doi:10.7717/peerj.9593> for details.

r-bgw 0.1.4
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://cran.r-project.org/package=bgw
Licenses: GPL 3
Build system: r
Synopsis: Bunch-Gay-Welsch Statistical Estimation
Description:

This package performs statistical estimation and inference-related computations by accessing and executing modified versions of Fortran subroutines originally published in the Association for Computing Machinery (ACM) journal Transactions on Mathematical Software (TOMS) by Bunch, Gay and Welsch (1993) <doi:10.1145/151271.151279>. The acronym BGW (from the authors last names) will be used when making reference to technical content (e.g., algorithm, methodology) that originally appeared in ACM TOMS. A key feature of BGW is that it exploits the special structure of statistical estimation problems within a trust-region-based optimization approach to produce an estimation algorithm that is much more effective than the usual practice of using optimization methods and codes originally developed for general optimization. The bgw package bundles R wrapper (and related) functions with modified Fortran source code so that it can be compiled and linked in the R environment for fast execution. This version implements a function ('bgw_mle.R') that performs maximum likelihood estimation (MLE) for a user-provided model object that computes probabilities (a.k.a. probability densities). The original motivation for producing this package was to provide fast, efficient, and reliable MLE for discrete choice models that can be called from the Apollo choice modelling R package ( see <https://www.apollochoicemodelling.com>). Starting with the release of Apollo 3.0, BGW is the default estimation package. However, estimation can also be performed using BGW in a stand-alone fashion without using Apollo (as shown in simple examples included in the package). Note also that BGW capabilities are not limited to MLE, and future extension to other estimators (e.g., nonlinear least squares, generalized method of moments, etc.) is possible. The Fortran code included in bgw was modified by one of the original BGW authors (Bunch) under his rights as confirmed by direct consultation with the ACM Intellectual Property and Rights Manager. See <https://authors.acm.org/author-resources/author-rights>. The main requirement is clear citation of the original publication (see above).

r-rrna 1.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=RRNA
Licenses: GPL 3
Build system: r
Synopsis: Secondary structure plotting for RNA
Description:

This package facilitates RNA secondary structure plotting.

r-rsgf 1.0.0
Propagated dependencies: r-stringr@1.6.0 r-stringi@1.8.7 r-png@0.1-8 r-ggplot2@4.0.2
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=Rsgf
Licenses: Expat
Build system: r
Synopsis: SGF (Smart Game File) File Format Import
Description:

Import SGF (Smart Game File) into R.

riddim 3420808b8d3f
Dependencies: lua@5.2.4 lua-verse@0.0.0-a9be85b2da17
Channel: guixrus
Location: guixrus/packages/riddim.scm (guixrus packages riddim)
Home page: https://code.matthewwild.co.uk/riddim
Licenses: Expat
Build system: copy
Synopsis:
Description:
rdfind 1.6.0
Dependencies: nettle@3.10.2
Channel: rrr
Location: rrr/packages/linux.scm (rrr packages linux)
Home page: https://rdfind.pauldreik.se/
Licenses: GPL 2
Build system: gnu
Synopsis: Redundant data find - a program that finds duplicate files
Description:
r-rtrm 1.50.0
Propagated dependencies: r-rsqlite@2.4.6 r-igraph@2.2.2 r-dbi@1.3.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/ddiez/rTRM
Licenses: GPL 3
Build system: r
Synopsis: Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Description:

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

r-rsdk 1.0.1
Propagated dependencies: r-testthat@3.3.2 r-shinywidgets@0.9.1 r-shiny@1.11.1 r-keys@0.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RSDK
Licenses: Expat
Build system: r
Synopsis: Sudoku with R
Description:

This is a sudoku game package with a shiny application for playing .

r-rmat 0.2.0
Propagated dependencies: r-purrr@1.2.1 r-magrittr@2.0.4 r-dplyr@1.2.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RMAT
Licenses: Expat
Build system: r
Synopsis: Random Matrix Analysis Toolkit
Description:

Simulate random matrices and ensembles and compute their eigenvalue spectra and dispersions.

r-rptr 0.9.23
Propagated dependencies: r-pbapply@1.7-4 r-lme4@1.1-38
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/mastoffel/rptR
Licenses: Expat
Build system: r
Synopsis: Repeatability Estimation for Gaussian and Non-Gaussian Data
Description:

Estimating repeatability (intra-class correlation) from Gaussian, binary, proportion and Poisson data.

r-roll 1.2.1
Propagated dependencies: r-rcppparallel@5.1.11-1 r-rcpparmadillo@15.2.3-1 r-rcpp@1.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/jasonjfoster/roll
Licenses: GPL 2+
Build system: r
Synopsis: Rolling and Expanding Statistics
Description:

Fast and efficient computation of rolling and expanding statistics for time-series data.

r-rbmn 0.9-6
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rbmn
Licenses: GPL 2+
Build system: r
Synopsis: Handling Linear Gaussian Bayesian Networks
Description:

Creation, manipulation, simulation of linear Gaussian Bayesian networks from text files and more...

r-repr 1.1.7
Propagated dependencies: r-base64enc@0.1-6 r-htmltools@0.5.9 r-jsonlite@2.0.0 r-pillar@1.11.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/repr/
Licenses: GPL 3
Build system: r
Synopsis: Serializable representations
Description:

This package provides string and binary representations of objects for several formats and MIME types.

r-rgmm 2.1.0
Propagated dependencies: r-rspectra@0.16-2 r-reshape2@1.4.5 r-rcpparmadillo@15.2.3-1 r-rcpp@1.1.1 r-mvtnorm@1.3-3 r-mclust@6.1.2 r-laplacesdemon@16.1.8 r-ggplot2@4.0.2 r-genieclust@1.3.0 r-foreach@1.5.2 r-doparallel@1.0.17 r-desctools@0.99.60
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RGMM
Licenses: GPL 2+
Build system: r
Synopsis: Robust Mixture Model
Description:

Algorithms for estimating robustly the parameters of a Gaussian, Student, or Laplace Mixture Model.

r-rfpm 1.1
Propagated dependencies: r-tidyr@1.3.2 r-lawstat@3.6 r-dplyr@1.2.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RFPM
Licenses: GPL 3+
Build system: r
Synopsis: Floating Percentile Model
Description:

Floating Percentile Model with additional functions for optimizing inputs and evaluating outputs and assumptions.

r-rct3 1.0.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rct3
Licenses: GPL 3
Build system: r
Synopsis: Predict Fish Year-Class Strength from Survey Data
Description:

Predict fish year-class strength by calibration regression analysis of multiple recruitment index series.

r-gaia 1.0
Dependencies: r-matrix@1.7-4
Channel: guix-arg
Location: guix-arg/packages/r-arg.scm (guix-arg packages r-arg)
Home page: https://github.com/blueraleigh/gaia
Licenses: Expat
Build system: r
Synopsis:
Description:
relate 1.2.2-7bd53c7
Dependencies: zlib@1.3.1
Channel: guix-arg
Location: guix-arg/packages/relate.scm (guix-arg packages relate)
Home page: https://myersgroup.github.io/relate/
Licenses:
Build system: cmake
Synopsis: Relate
Description:

Relate

r-rzmq 0.9.16
Dependencies: zlib@1.3.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rzmq
Licenses: GPL 3
Build system: r
Synopsis: R Bindings for 'ZeroMQ'
Description:

Interface to the ZeroMQ lightweight messaging kernel (see <https://zeromq.org/> for more information).

r-rkvo 0.1
Propagated dependencies: r-rcpp@1.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rkvo
Licenses: GPL 3
Build system: r
Synopsis: Read Key/Value Pair Observations
Description:

This package provides functionality to read files containing observations which consist of arbitrary key/value pairs.

r-rslp 0.2.0
Propagated dependencies: r-tokenizers@0.3.0 r-stringr@1.6.0 r-stringi@1.8.7 r-plyr@1.8.9 r-magrittr@2.0.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/dfalbel/rslp
Licenses: Expat
Build system: r
Synopsis: Stemming Algorithm for the Portuguese Language
Description:

This package implements the "Stemming Algorithm for the Portuguese Language" <DOI:10.1109/SPIRE.2001.10024>.

r-rgen 0.0.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rgen
Licenses: GPL 2+
Build system: r
Synopsis: Random Sampling Distribution C++ Routines for Armadillo
Description:

This package provides popular sampling distributions C++ routines based in armadillo through a header file approach.

r-rskc 2.4.2
Propagated dependencies: r-flexclust@1.5.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RSKC
Licenses: GPL 2+
Build system: r
Synopsis: Robust Sparse K-Means
Description:

This RSKC package contains a function RSKC which runs the robust sparse K-means clustering algorithm.

r-rbgl 1.86.0
Propagated dependencies: r-bh@1.90.0-1 r-graph@1.88.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://www.bioconductor.org/packages/RBGL
Licenses: Artistic License 2.0
Build system: r
Synopsis: Interface to the Boost graph library
Description:

This package provides a fairly extensive and comprehensive interface to the graph algorithms contained in the Boost library.

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Total packages: 31369