This package contains a MonadRef type class that abstracts over the details of manipulating references, allowing one to write code that can operate in either the ST monad or the IO monad.
This package provides a client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.
This package provides tools for the fitting and cross validation of exact conditional logistic regression models with lasso and elastic net penalties. Uses cyclic coordinate descent and warm starts to compute the entire path efficiently.
Resampling is a standard step in particle filtering and in sequential Monte Carlo. This package implements the chopthin resampler, which keeps a bound on the ratio between the largest and the smallest weights after resampling.
API to the database of CRAN package downloads from the RStudio CRAN mirror'. The database itself is at <http://cranlogs.r-pkg.org>, see <https://github.com/r-hub/cranlogs.app> for the raw API'.
Evaluates the empirical characteristic function of univariate and multivariate samples. This package uses RcppArmadillo for fast evaluation. It is also possible to export the code to be used in other packages at C++ level.
This package provides functions for plotting probability density functions, distribution functions, survival functions, hazard functions and computing distribution moments. The implementation is inspired by Delignette-Muller and Dutang (2015) <doi:10.18637/jss.v064.i04>.
Saves a ggplot object into multiple files, each with a layer added incrementally. Generally to be used in presentation slides. Flexible enough to allow different file types for the final complete plot, and intermediate builds.
Allows get address and port of the free proxy server, from one of two services <http://gimmeproxy.com/> or <https://getproxylist.com/>. And it's easy to redirect your Internet connection through a proxy server.
Spatio-temporal radial basis functions (optimization, prediction and cross-validation), summary statistics from cross-validation, Adjusting distance-based linear regression model and generation of the principal coordinates of a new individual from Gower's distance.
Multiple matrices/tensors can be specified and decomposed simultaneously by Probabilistic Latent Tensor Factorisation (PLTF). See the reference section of GitHub README.md <https://github.com/rikenbit/gcTensor>, for details of the method.
Initializes a class that obtains API credentials and provides a method to use those credentials to make GET requests to the Hakai API server. Usage instructions are documented at <https://hakaiinstitute.github.io/hakai-api/>.
Pre-processing and basic analytical tasks for working with Eurostat's symmetric inputâ output tables, and basic inputâ output economics calculations. Part of rOpenGov <https://ropengov.github.io/> for open source open government initiatives.
Generate interactive volcano plots for exploring gene expression data. Built with ggplot2', the plots are rendered interactive using ggiraph', enabling users to hover over points to display detailed information or click to trigger custom actions.
This package provides an R version of the InterVA4 software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
New kernel-based test and fast tests for testing whether two samples are from the same distribution. They work well particularly for high-dimensional data. Song, H. and Chen, H. (2023) <arXiv:2011.06127>.
Gene Expression datasets for the MM2S package. Contains normalized expression data for Human Medulloblastoma ('GSE37418') as well as Mouse Medulloblastoma models ('GSE36594'). Deena Gendoo et al. (2015) <doi:10.1016/j.ygeno.2015.05.002>.
Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by various packages including debug, offarray, and kinference.
This package provides a navigation menu to enable pipe-friendly data processing for hierarchical data structures. By activating the menu items, you can perform operations on each item while maintaining the overall structure in attributes.
Geocode with the OpenCage API, either from place name to longitude and latitude (forward geocoding) or from longitude and latitude to the name and address of a location (reverse geocoding), see <https://opencagedata.com/>.
An optimal transport (OT) method, which can handle tensors of any order by learning possibly multiple transport plans. For the details of the methods, see Kerdoncuff et al. (2022) <doi:10.1609/aaai.v36i7.20695>.
An implementation of a formal grammar and parser for R Markdown documents using the Boost Spirit X3 library. It also includes a collection of high level functions for working with the resulting abstract syntax tree.
Runs generalized and multinominal logistic (GLM and MLM) models, as well as random forest (RF), Bagging (BAG), and Boosting (BOOST). This package prints out to predictive outcomes easy for the selected data and data splits.
Supports maximum likelihood inference for the Pearson VII distribution with shape parameter 3/2 and free location and scale parameters. This distribution is relevant when estimating the velocity of processive motor proteins with random detachment.