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r-josaplay 0.1.3
Propagated dependencies: r-utf8@1.2.5 r-magrittr@2.0.3
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/mrchypark/josaplay
Licenses: Expat
Synopsis: Add Josa Based on Previous Letter in Korean
Description:

Josa in Korean is often determined by judging the previous word. When writing reports using Rmd, a function that prints the appropriate investigation for each case is helpful. The josaplay package then evaluates the previous word to determine which josa is appropriate.

r-keyclust 1.2.5
Propagated dependencies: r-textstem@0.1.4 r-rcpp@1.0.14 r-data-table@1.17.2
Channel: guix-cran
Location: guix-cran/packages/k.scm (guix-cran packages k)
Home page: https://cran.r-project.org/package=keyclust
Licenses: GPL 3
Synopsis: Model for Semi-Supervised Keyword Extraction from Word Embedding Models
Description:

This package provides a fast and computationally efficient algorithm designed to enable researchers to efficiently and quickly extract semantically-related keywords using a fitted embedding model. For more details about the methods applied, see Chester (2025). <doi:10.17605/OSF.IO/5B7RQ>.

r-kappagui 2.0.2
Propagated dependencies: r-shiny@1.10.0 r-irr@0.84.1
Channel: guix-cran
Location: guix-cran/packages/k.scm (guix-cran packages k)
Home page: https://cran.r-project.org/package=KappaGUI
Licenses: GPL 2+
Synopsis: An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa
Description:

Offers a graphical user interface for the evaluation of inter-rater agreement with Cohen's and Fleiss Kappa. The calculation of kappa statistics is done using the R package irr', so that KappaGUI is essentially a Shiny front-end for irr'.

r-multiocc 0.2.1
Propagated dependencies: r-truncnorm@1.0-9 r-tmvtnorm@1.6 r-mass@7.3-65 r-interp@1.1-6 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=multiocc
Licenses: GPL 2
Synopsis: Fits Multivariate Spatio-Temporal Occupancy Model
Description:

Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This method for fitting such models is described in Hepler and Erhardt (2021) "A spatiotemporal model for multivariate occupancy data" <https://onlinelibrary.wiley.com/doi/abs/10.1002/env.2657>.

r-na-tools 0.3.1
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/decisionpatterns/na.tools
Licenses: GPL 3 FSDG-compatible
Synopsis: Comprehensive Library for Working with Missing (NA) Values in Vectors
Description:

This comprehensive toolkit provide a consistent and extensible framework for working with missing values in vectors. The companion package tidyimpute provides similar functionality for list-like and table-like structures). Functions exist for detection, removal, replacement, imputation, recollection, etc. of NAs'.

r-orgutils 0.5-0
Propagated dependencies: r-textutils@0.4-2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://enricoschumann.net/R/packages/orgutils/
Licenses: GPL 2+
Synopsis: Helper Functions for Org Files
Description:

Helper functions for Org files (<https://orgmode.org/>): a generic function toOrg for transforming R objects into Org markup (most useful for data frames; there are also methods for Dates/POSIXt) and a function to read Org tables into data frames.

r-sketcher 0.1.3
Propagated dependencies: r-stringr@1.5.1 r-readbitmap@0.1.5 r-png@0.1-8 r-magrittr@2.0.3 r-jpeg@0.1-11 r-imager@1.0.3 r-dplyr@1.1.4 r-downloader@0.4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://htsuda.net/sketcher/
Licenses: Expat
Synopsis: Pencil Sketch Effect
Description:

An implementation of image processing effects that convert a photo into a line drawing image. For details, please refer to Tsuda, H. (2020). sketcher: An R package for converting a photo into a sketch style image. <doi:10.31234/osf.io/svmw5>.

r-sigclust 1.1.0.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=sigclust
Licenses: GPL 2+
Synopsis: Statistical Significance of Clustering
Description:

SigClust is a statistical method for testing the significance of clustering results. SigClust can be applied to assess the statistical significance of splitting a data set into two clusters. For more than two clusters, SigClust can be used iteratively.

r-thresher 1.1.5
Propagated dependencies: r-pcdimension@1.1.14 r-oompabase@3.2.10 r-movmf@0.2-9 r-mass@7.3-65 r-colorspace@2.1-1 r-classdiscovery@3.4.8 r-ade4@1.7-23
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: http://oompa.r-forge.r-project.org/
Licenses: ASL 2.0
Synopsis: Threshing and Reaping for Principal Components
Description:

Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.

r-truelies 0.2.0
Propagated dependencies: r-hdrcde@3.4
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/hughjonesd/truelies
Licenses: Expat
Synopsis: Bayesian Methods to Estimate the Proportion of Liars in Coin Flip Experiments
Description:

This package implements Bayesian methods, described in Hugh-Jones (2019) <doi:10.1007/s40881-019-00069-x>, for estimating the proportion of liars in coin flip-style experiments, where subjects report a random outcome and are paid for reporting a "good" outcome.

r-validann 1.2.1
Propagated dependencies: r-moments@0.14.1
Channel: guix-cran
Location: guix-cran/packages/v.scm (guix-cran packages v)
Home page: http://github.com/gbhumphrey1/validann
Licenses: GPL 2+
Synopsis: Validation Tools for Artificial Neural Networks
Description:

This package provides methods and tools for analysing and validating the outputs and modelled functions of artificial neural networks (ANNs) in terms of predictive, replicative and structural validity. Also provides a method for fitting feed-forward ANNs with a single hidden layer.

r-cellmixs 1.24.0
Propagated dependencies: r-viridis@0.6.5 r-tidyr@1.3.1 r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-scater@1.36.0 r-purrr@1.0.4 r-magrittr@2.0.3 r-ksamples@1.2-10 r-ggridges@0.5.6 r-ggplot2@3.5.2 r-dplyr@1.1.4 r-cowplot@1.1.3 r-biocparallel@1.42.0 r-biocneighbors@2.2.0 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://github.com/almutlue/CellMixS
Licenses: FSDG-compatible
Synopsis: Evaluate Cellspecific Mixing
Description:

CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.

r-fastreer 1.12.0
Dependencies: openjdk@24.0.1
Propagated dependencies: r-stringr@1.5.1 r-rjava@1.0-11 r-r-utils@2.13.0 r-dynamictreecut@1.63-1 r-data-table@1.17.2 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/gkanogiannis/fastreeR
Licenses: GPL 3
Synopsis: Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
Description:

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

r-bgeecall 1.24.0
Propagated dependencies: kallisto@0.50.1 r-biomart@2.64.0 r-biostrings@2.76.0 r-data-table@1.17.2 r-dplyr@1.1.4 r-genomicfeatures@1.60.0 r-jsonlite@2.0.0 r-rhdf5@2.52.0 r-rslurm@0.6.2 r-rtracklayer@1.68.0 r-sjmisc@2.8.10 r-txdbmaker@1.4.1 r-tximport@1.36.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/BgeeDB/BgeeCall
Licenses: GPL 3
Synopsis: RNA-Seq present/absent gene expression calls generation
Description:

BgeeCall allows generating present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee.

r-anvilgcp 1.2.0
Propagated dependencies: r-anvilbase@1.2.0 r-biocbaseutils@1.10.0 r-dplyr@1.1.4 r-httr@1.4.7 r-jsonlite@2.0.0 r-rlang@1.1.6 r-tibble@3.2.1 r-tidyr@1.3.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/Bioconductor/AnVILGCP
Licenses: Artistic License 2.0
Synopsis: GCP R client for the AnVIL
Description:

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.

r-webutils 1.2.2
Propagated dependencies: r-curl@6.2.2 r-jsonlite@2.0.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/jeroen/webutils
Licenses: Expat
Synopsis: Utility functions for developing web applications
Description:

This package parses HTTP request data in application/json, multipart/form-data, or application/x-www-form-urlencoded format. It includes an example of hosting and parsing HTML form data in R using either httpuv or Rhttpd.

r-multcomp 1.4-28
Propagated dependencies: r-codetools@0.2-20 r-mvtnorm@1.3-3 r-sandwich@3.1-1 r-survival@3.8-3 r-th-data@1.1-3
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/multcomp/
Licenses: GPL 2
Synopsis: Simultaneous inference in general parametric models
Description:

Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).

r-geojsonr 1.1.2
Propagated dependencies: r-r6@2.6.1 r-rcpp@1.0.14 r-rcpparmadillo@14.4.2-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/mlampros/geojsonR
Licenses: Expat
Synopsis: GeoJson processing toolkit
Description:

This package includes functions for processing GeoJson objects relying on RFC 7946. The geojson encoding is based on json11, a tiny JSON library for C++11. Furthermore, the source code is exported in R through the Rcpp and RcppArmadillo packages.

r-lmoments 1.3-1
Propagated dependencies: r-rcpp@1.0.14 r-rcpparmadillo@14.4.2-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: http://www.tilastotiede.fi/juha_karvanen.html
Licenses: GPL 2
Synopsis: L-moments and quantile mixtures
Description:

This package contains functions to estimate L-moments and trimmed L-moments from the data. It also contains functions to estimate the parameters of the normal polynomial quantile mixture and the Cauchy polynomial quantile mixture from L-moments and trimmed L-moments.

python-rsa 3.4.2
Propagated dependencies: python-pyasn1@0.4.8
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://stuvel.eu/rsa
Licenses: ASL 2.0
Synopsis: Pure-Python RSA implementation
Description:

Python-RSA is a pure-Python RSA implementation. It supports encryption and decryption, signing and verifying signatures, and key generation according to PKCS#1 version 1.5. It can be used as a Python library as well as on the command line.

ruby-debug 1.7.2
Propagated dependencies: ruby-irb@1.6.3 ruby-reline@0.3.3
Channel: guix
Location: gnu/packages/ruby.scm (gnu packages ruby)
Home page: https://github.com/ruby/debug
Licenses: FreeBSD
Synopsis: Debugging functionality for Ruby
Description:

Debugging functionality for Ruby. This is completely rewritten debug.rb which was contained by the ancient Ruby versions. It is included with Ruby itself, but this package is made available so that the latest version can be made available independently from Ruby.

r-rwsearch 5.2.4
Propagated dependencies: r-xml@3.99-0.18 r-sos@2.1-8 r-sig@0.0-6 r-networkd3@0.4.1 r-latexpdf@0.1.8 r-brew@1.0-10
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RWsearch
Licenses: GPL 2
Synopsis: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One Download
Description:

Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.

r-rdrobust 2.2
Propagated dependencies: r-mass@7.3-65 r-ggplot2@3.5.2
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rdrobust
Licenses: GPL 2
Synopsis: Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
Description:

Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).

r-roptimus 3.0.0
Propagated dependencies: r-iterators@1.0.14 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/SahakyanLab/ROptimus
Licenses: GPL 3+
Synopsis: Parallel General-Purpose Adaptive Optimisation Engine
Description:

This package provides a general-purpose optimisation engine that supports i) Monte Carlo optimisation with Metropolis criterion [Metropolis et al. (1953) <doi:10.1063/1.1699114>, Hastings (1970) <doi:10.1093/biomet/57.1.97>] and Acceptance Ratio Simulated Annealing [Kirkpatrick et al. (1983) <doi:10.1126/science.220.4598.671>, Ä erný (1985) <doi:10.1007/BF00940812>] on multiple cores, and ii) Acceptance Ratio Replica Exchange Monte Carlo Optimisation. In each case, the system pseudo-temperature is dynamically adjusted such that the observed acceptance ratio is kept near to the desired (fixed or changing) acceptance ratio.

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