Josa in Korean is often determined by judging the previous word. When writing reports using Rmd, a function that prints the appropriate investigation for each case is helpful. The josaplay package then evaluates the previous word to determine which josa is appropriate.
This package provides a fast and computationally efficient algorithm designed to enable researchers to efficiently and quickly extract semantically-related keywords using a fitted embedding model. For more details about the methods applied, see Chester (2025). <doi:10.17605/OSF.IO/5B7RQ>.
Offers a graphical user interface for the evaluation of inter-rater agreement with Cohen's and Fleiss Kappa. The calculation of kappa statistics is done using the R package irr', so that KappaGUI
is essentially a Shiny front-end for irr'.
Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This method for fitting such models is described in Hepler and Erhardt (2021) "A spatiotemporal model for multivariate occupancy data" <https://onlinelibrary.wiley.com/doi/abs/10.1002/env.2657>.
This comprehensive toolkit provide a consistent and extensible framework for working with missing values in vectors. The companion package tidyimpute provides similar functionality for list-like and table-like structures). Functions exist for detection, removal, replacement, imputation, recollection, etc. of NAs'.
Helper functions for Org files (<https://orgmode.org/>): a generic function toOrg
for transforming R objects into Org markup (most useful for data frames; there are also methods for Dates/POSIXt) and a function to read Org tables into data frames.
An implementation of image processing effects that convert a photo into a line drawing image. For details, please refer to Tsuda, H. (2020). sketcher: An R package for converting a photo into a sketch style image. <doi:10.31234/osf.io/svmw5>.
SigClust
is a statistical method for testing the significance of clustering results. SigClust
can be applied to assess the statistical significance of splitting a data set into two clusters. For more than two clusters, SigClust
can be used iteratively.
Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.
This package implements Bayesian methods, described in Hugh-Jones (2019) <doi:10.1007/s40881-019-00069-x>, for estimating the proportion of liars in coin flip-style experiments, where subjects report a random outcome and are paid for reporting a "good" outcome.
This package provides methods and tools for analysing and validating the outputs and modelled functions of artificial neural networks (ANNs) in terms of predictive, replicative and structural validity. Also provides a method for fitting feed-forward ANNs with a single hidden layer.
CellMixS
provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.
Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java and called via rJava
. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.
BgeeCall allows generating present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee.
The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL
platform. The package is designed to work with the AnVIL
package. User-level interaction with this package should be minimal.
This package parses HTTP request data in application/json
, multipart/form-data
, or application/x-www-form-urlencoded
format. It includes an example of hosting and parsing HTML form data in R using either httpuv
or Rhttpd
.
Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).
This package includes functions for processing GeoJson
objects relying on RFC 7946. The geojson encoding is based on json11, a tiny JSON library for C++11. Furthermore, the source code is exported in R through the Rcpp and RcppArmadillo
packages.
This package contains functions to estimate L-moments and trimmed L-moments from the data. It also contains functions to estimate the parameters of the normal polynomial quantile mixture and the Cauchy polynomial quantile mixture from L-moments and trimmed L-moments.
Python-RSA is a pure-Python RSA implementation. It supports encryption and decryption, signing and verifying signatures, and key generation according to PKCS#1 version 1.5. It can be used as a Python library as well as on the command line.
Debugging functionality for Ruby. This is completely rewritten debug.rb which was contained by the ancient Ruby versions. It is included with Ruby itself, but this package is made available so that the latest version can be made available independently from Ruby.
Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust()
to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect()
to perform bandwidth selection for the different procedures implemented, and rdplot()
to conduct exploratory data analysis (RD plots).
This package provides a general-purpose optimisation engine that supports i) Monte Carlo optimisation with Metropolis criterion [Metropolis et al. (1953) <doi:10.1063/1.1699114>, Hastings (1970) <doi:10.1093/biomet/57.1.97>] and Acceptance Ratio Simulated Annealing [Kirkpatrick et al. (1983) <doi:10.1126/science.220.4598.671>, Ä erný (1985) <doi:10.1007/BF00940812>] on multiple cores, and ii) Acceptance Ratio Replica Exchange Monte Carlo Optimisation. In each case, the system pseudo-temperature is dynamically adjusted such that the observed acceptance ratio is kept near to the desired (fixed or changing) acceptance ratio.