Helps enable adaptive management by codifying knowledge in the form of models generated from numerous analyses and data sets. Facilitates this process by storing all models and data sets in a single object that can be updated and saved, thus tracking changes in knowledge through time. A shiny application called AM Model Manager (modelMgr()) enables the use of these functions via a GUI.

Calculate ActiGraph counts from the X, Y, and Z axes of a triaxial accelerometer. This work was inspired by Neishabouri et al. who published the article "Quantification of Acceleration as Activity Counts in ActiGraph Wearables" on February 24, 2022. The link to the article (<https://pubmed.ncbi.nlm.nih.gov/35831446>) and python implementation of this code (<https://github.com/actigraph/agcounts>).

This package provides easy access to the AviList Global Avian Checklist, the first unified global bird taxonomy that harmonizes previous differences between International Ornithological Committee ('IOC'), Clements', and BirdLife checklists. This package contains the complete AviList dataset as R data objects ready for ornithological research and analysis. For more details see AviList Core Team (2025) <doi:10.2173/avilist.v2025>.

This package provides a number of functions to access the National Energy Research Laboratory Alternate Fuel Locator API <https://developer.nrel.gov/docs/transportation/alt-fuel-stations-v1/>. The Alternate Fuel Locator shows the location of alternate fuel stations in the United States and Canada. This package also includes the data from the US Department of Energy Alternate Fuel database as a data set.

Utilities for Bratteli graphs. A tree is an example of a Bratteli graph. The package provides a function which generates a LaTeX file that renders the given Bratteli graph. It also provides functions to compute the dimensions of the vertices, the intrinsic kernels and the intrinsic distances. Intrinsic kernels and distances were introduced by Vershik (2014) <doi:10.1007/s10958-014-1958-0>.

This package provides functionality to automatically detect groove locations via a Bayesian changepoint detection method to be used in the data preprocessing step of forensic bullet matching algorithms. The methods in this package are based on those in Stephens (1994) <doi:10.2307/2986119>. Bayesian changepoint detection will simply be an option in the function from the package bulletxtrctr which identifies the groove locations.

Responsive and modern HTML card essentials for shiny applications and dashboards. This novel card component in Bootstrap provides a flexible and extensible content container with multiple variants and options for building robust R based apps e.g for graph build or machine learning projects. The features rely on a combination of JQuery <https://jquery.com> and CSS styles to improve the card functionality.

Several authors have proposed methods for constructing simultaneous confidence intervals for multinomial proportions. The package implements seven classical approachesâ Wilson, Quesenberry and Hurst, Goodman, Wald (with and without continuity correction), Fitzpatrick and Scott, and Sison and Glazâ along with Bayesian methods based on Dirichlet models. Both equal and unequal Dirichlet priors are supported, providing a broad framework for inference, data analysis, and sensitivity evaluation.

This package creates project specific directory and file templates that are written to a .Rprofile file. Upon starting a new R session, these templates can be used to streamline the creation of new directories that are standardized to the user's preferences and can include the initiation of a git repository, an RStudio R project, and project-local dependency management with the renv package.

Allows to generate colors from palettes defined in the colormap module of Node.js'. (see <https://github.com/bpostlethwaite/colormap> for more information). In total it provides 44 distinct palettes made from sequential and/or diverging colors. In addition to the pre defined palettes you can also specify your own set of colors. There are also scale functions that can be used with ggplot2'.

This package provides a local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. crosshap enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.

Simple Principal Components Analysis (PCA) and (Multiple) Correspondence Analysis (CA) based on the Singular Value Decomposition (SVD). This package provides S4 classes and methods to compute, extract, summarize and visualize results of multivariate data analysis. It also includes methods for partial bootstrap validation described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et al. (2006, ISBN: 978-2-10-049616-7).

This package contains a function called dmur() which accepts four parameters like possible values, probabilities of the values, selling cost and preparation cost. The dmur() function generates various numeric decision parameters like MEMV (Maximum (optimum) expected monitory value), best choice, EPPI (Expected profit with perfect information), EVPI (Expected value of the perfect information), EOL (Expected opportunity loss), which facilitate effective decision-making.

Go beyond standard probability distributions such as the Normal or Exponential by combining, shifting, maximizing, and otherwise transforming distributions with simple, verb-based functions. Provides easy access to a broader space of distributions more representative of real-world systems such as river flows or insurance claims. Part of the probaverse framework of packages to support advanced statistical modeling and simulations with an intuitive workflow.

This package provides a genetic algorithm for finding variable subsets in high dimensional data with high prediction performance. The genetic algorithm can use ordinary least squares (OLS) regression models or partial least squares (PLS) regression models to evaluate the prediction power of variable subsets. By supporting different cross-validation schemes, the user can fine-tune the tradeoff between speed and quality of the solution.

This package provides density, distribution and random generation functions for the Linear Ballistic Accumulation (LBA) model, a widely used choice response time model in cognitive psychology. The package supports model specifications, parameter estimation, and likelihood computation, facilitating simulation and statistical inference for LBA-based experiments. For details on the LBA model, see Brown and Heathcote (2008) <doi:10.1016/j.cogpsych.2007.12.002>.

Framework for building modular Monte Carlo risk analysis models. It extends the capabilities of mc2d to facilitate working with multiple risk pathways, variates and scenarios. It provides tools to organize risk analysis in independent flexible modules, perform multivariate Monte Carlo node operations, automate the creation of Monte Carlo nodes and visualise risk analysis models. For more details see Ciria (2025) <https://nataliaciria.com/mcmodule/>.

Proxy forward modelling for sediment archived climate proxies such as Mg/Ca, d18O or Alkenones. The user provides a hypothesised "true" past climate, such as output from a climate model, and details of the sedimentation rate and sampling scheme of a sediment core. Sedproxy returns simulated proxy records. Implements the methods described in Dolman and Laepple (2018) <doi:10.5194/cp-14-1851-2018>.

This package provides a comprehensive suite of portfolio spanning tests for asset pricing, such as Huberman and Kandel (1987) <doi:10.1111/j.1540-6261.1987.tb03917.x>, Gibbons et al. (1989) <doi:10.2307/1913625>, Kempf and Memmel (2006) <doi:10.1007/BF03396737>, Pesaran and Yamagata (2024) <doi:10.1093/jjfinec/nbad002>, and Gungor and Luger (2016) <doi:10.1080/07350015.2015.1019510>.

This package provides a collection of functions for automatically creating Stan code for transition diagnostic classification models (TDCMs) as they are defined by Madison and Bradshaw (2018) <DOI:10.1007/s11336-018-9638-5>. This package supports automating the creation of Stan code for TDCMs, fungible TDCMs (i.e., TDCMs with item parameters constrained to be equal across all items), and multi-threaded TDCMs.

Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates. References: Kellner et al. (2023) <doi:10.1111/2041-210X.14123>, Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.

Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI libraries for simplifying ML compute. These are the provided Ray AI libraries:

• Data: Scalable datasets for ML;

• Train: Distributed training;

• Tune: Scalable hyperparameter tuning;

• RLlib: Scalable reinforcement learning;

• Serve: Scalable and programmable serving.

Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI libraries for simplifying ML compute. These are the provided Ray AI libraries:

• Data: Scalable datasets for ML;

• Train: Distributed training;

• Tune: Scalable hyperparameter tuning;

• RLlib: Scalable reinforcement learning;

• Serve: Scalable and programmable serving.

This package provides functions for bipartite network rewiring through N consecutive switching steps and for the computation of the minimal number of switching steps to be performed in order to maximise the dissimilarity with respect to the original network. It includes functions for the analysis of the introduced randomness across the switching steps and several other routines to analyse the resulting networks and their natural projections.