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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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python-oslo.log 5.0.0
Propagated dependencies: python-dateutil@2.8.2 python-debtcollector@1.19.0 python-oslo.config@8.7.1 python-oslo.context@5.0.0 python-oslo.i18n@3.20.0 python-oslo.utils@4.12.0 python-oslo.serialization@4.2.0 python-pyinotify@0.9.6
Channel: guix
Location: gnu/packages/openstack.scm (gnu packages openstack)
Home page: https://launchpad.net/oslo
Licenses: ASL 2.0
Synopsis: Python logging library of the Oslo project
Description:

The oslo.log (logging) configuration library provides standardized configuration for all OpenStack projects. It also provides custom formatters, handlers and support for context specific logging (like resource id’s etc).

python-flit-scm 1.7.0
Propagated dependencies: python-flit-core@3.8.0 python-setuptools-scm@7.1.0 python-tomli@2.1.0
Channel: guix
Location: gnu/packages/python-build.scm (gnu packages python-build)
Home page: https://gitlab.com/WillDaSilva/flit_scm
Licenses: Expat
Synopsis: PEP 518 build backend combining flit_core and setuptools_scm
Description:

This package provides a PEP 518 build backend that uses setuptools_scm to generate a version file from your version control system, then flit_core to build the package.

python-keyutils 0.6
Dependencies: keyutils@1.6.3
Channel: guix
Location: gnu/packages/python-crypto.scm (gnu packages python-crypto)
Home page: https://github.com/sassoftware/python-keyutils
Licenses: ASL 2.0
Synopsis: Python bindings for keyutils
Description:

This is a set of python bindings for keyutils, a key management suite that leverages the infrastructure provided by the Linux kernel for safely storing and retrieving sensitive information in your programs.

python-watchgod 0.8.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/samuelcolvin/watchgod
Licenses: Expat
Synopsis: Simple, modern file watching and code reload in Python
Description:

Simple, modern file watching and code reload in Python inspired by watchdog. Among the differences are a unified approach for each operating systems and an elegant approach to concurrency using threading.

python-yamllint 1.31.0
Propagated dependencies: python-pathspec@0.11.1 python-pyyaml@6.0.1 python-setuptools@67.6.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/adrienverge/yamllint
Licenses: GPL 3+
Synopsis: Linter for YAML files
Description:

Yamllint is a linter for YAML files. yamllint does not only check for syntax validity, but for weirdnesses like key repetition and cosmetic problems such as lines length, trailing spaces, indentation, etc.

scalable-python 2.7.13
Dependencies: bzip2@1.0.8 expat@2.5.0 gdbm@1.23 libffi@3.4.4 libxcrypt@4.4.36 sqlite@3.39.3 openssl@1.1.1u readline@8.1.2 zlib@1.3 tcl@8.6.12 tk@8.6.12
Propagated dependencies: openmpi@4.1.6
Channel: guix-hpc
Location: guix-hpc/packages/solverstack.scm (guix-hpc packages solverstack)
Home page: https://github.com/CSCfi/scalable-python.git
Licenses: Python Software Foundation License
Synopsis: High-level, dynamically-typed programming language
Description:

Modified python 2.7.13. Scalable Python performs the I/O operations used e.g. by import statements in a single process and uses MPI to transmit data to/from all other processes.

python-whatshap 2.3-0.5722d69
Propagated dependencies: python-biopython@1.80 python-matplotlib@3.8.2 python-networkx@3.4.2 python-pulp@2.4 python-pyfaidx@0.7.2.1 python-scipy@1.12.0 python-xopen@1.7.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://whatshap.readthedocs.io/
Licenses: Expat
Synopsis: Read-based phasing of genomic variants
Description:

WhatsHap is software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

python-slamdunk 0.4.3
Propagated dependencies: python-biopython@1.80 python-intervaltree@3.1.0 python-joblib@1.4.2 python-pandas@2.2.3 python-pybedtools@0.10.0 python-pysam@0.20.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://t-neumann.github.io/slamdunk/
Licenses: AGPL 3+
Synopsis: Streamline SLAM-seq analysis with high sensitivity
Description:

SlamDunk is a fully automated tool for automated, robust, scalable and reproducible SLAMseq data analysis. Diagnostic plotting features and a MultiQC plugin will make your SLAMseq data ready for immediate QA and interpretation.

python-lfdfiles 2021.2.22
Propagated dependencies: python-click@8.1.7 python-numpy@1.24.4 python-tifffile@2023.12.9
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://www.lfd.uci.edu/~gohlke/
Licenses: Modified BSD
Synopsis: Work with LFD data files
Description:

Lfdfiles is a Python library and console script for reading, writing, converting, and viewing many of the proprietary file formats used to store experimental data and metadata at the Laboratory for Fluorescence Dynamics.

python-progress 1.6
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: http://github.com/verigak/progress/
Licenses: ISC
Synopsis: Progress reporting bars for Python
Description:

This Python package provides progress reporting for visual of progress of long running operations. There are multiple choices of progress bars and spinners, with customizable options, such as width, fill character, and suffix.

python-pyserial 3.5
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/pyserial/pyserial
Licenses: Modified BSD
Synopsis: Python Serial Port Bindings
Description:

pyserial provide serial port bindings for Python. It supports different byte sizes, stop bits, parity and flow control with RTS/CTS and/or Xon/Xoff. The port is accessed in RAW mode.

python-pendulum 2.1.2
Propagated dependencies: python-dateutil@2.8.2 python-pytzdata@2020.1
Channel: guix
Location: gnu/packages/time.scm (gnu packages time)
Home page: https://github.com/sdispater/pendulum
Licenses: Expat
Synopsis: Alternate API for Python datetimes
Description:

Pendulum is a drop-in replacement for the standard {datetime

python-whatshap 1.1
Dependencies: python-biopython@1.80 python-networkx@3.4.2 python-pyfaidx@0.7.2.1 python-pysam@0.20.0 python-scipy@1.12.0 python-xopen@1.7.0
Channel: gn-bioinformatics
Location: gn/packages/bioinformatics.scm (gn packages bioinformatics)
Home page: https://github.com/whatshap/whatshap/
Licenses: Expat
Synopsis: Read-based phasing of genomic variants
Description:

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

python-hic2cool 0.8.3
Propagated dependencies: python-cooler@0.9.3 python-h5py@3.8.0 python-numpy@1.24.4 python-pandas@2.2.3 python-scipy@1.12.0
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/4dn-dcic/hic2cool
Licenses: Expat
Synopsis: Converter for .hic and .cool files
Description:

This package provides a converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler). Both hic and cool files describe Hi-C contact matrices.

python-coverage 7.6.8
Propagated dependencies: python-tomli@2.1.0
Channel: guix
Location: gnu/packages/check.scm (gnu packages check)
Home page: https://coverage.readthedocs.io
Licenses: Modified BSD
Synopsis: Code coverage measurement for Python
Description:

Coverage measures code coverage, typically during test execution. It uses the code analysis tools and tracing hooks provided in the Python standard library to determine which lines are executable, and which have been executed.

python-sendgrid 6.9.7
Propagated dependencies: python-http-client@3.3.7 python-starkbank-ecdsa@2.0.3
Channel: guix
Location: gnu/packages/python-web.scm (gnu packages python-web)
Home page: https://github.com/sendgrid/sendgrid-python/
Licenses: Expat
Synopsis: SendGrid API library for Python
Description:

The sendgrid Python library allows access to the SendGrid Web API v3. Version 3+ of the library provides full support for all SendGrid Web API v3 endpoints, including the new v3 /mail/send.

python-grid5000 1.2.3
Propagated dependencies: python-requests@2.31.0 python-ipython@8.29.0 python-pyyaml@6.0.1
Channel: guix
Location: gnu/packages/python-web.scm (gnu packages python-web)
Home page: https://pypi.org/project/python-grid5000/
Licenses: GPL 3+
Synopsis: Grid5000 python client
Description:

python-grid5000 is a python package wrapping the Grid5000 REST API. You can use it as a library in your python project or you can explore the Grid5000 resources interactively using the embedded shell.

python-testpath 0.5.0
Channel: guix
Location: gnu/packages/check.scm (gnu packages check)
Home page: https://github.com/jupyter/testpath
Licenses: Expat
Synopsis: Test utilities for code working with files and commands
Description:

Testpath is a collection of utilities for Python code working with files and commands. It contains functions to check things on the file system, and tools for mocking system commands and recording calls to those.

python-pyspnego 0.8.0
Propagated dependencies: python-cryptography@42.0.5 python-gssapi@1.8.2 python-krb5@0.5.1 python-ruamel.yaml@0.18.6
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/jborean93/pyspnego
Licenses: Expat
Synopsis: Python SPNEGO library
Description:

The pyspnego Python library handles Negotiate, NTLM, Kerberos (SPNEGO) and CredSSP authentication. It also includes a packet parser that can be used to decode raw NTLM/SPNEGO/Kerberos tokens into a human readable format.

python-graphene 3.0
Propagated dependencies: python-graphql-core@3.1.2 python-graphql-relay@3.1.0 python-aniso8601@9.0.1 python-promise@0.4.2 python-six@1.16.0
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://graphene-python.org/
Licenses: Expat
Synopsis: GraphQL Framework for Python
Description:

Graphene is a Python library for building GraphQL schemas/types. A GraphQL schema describes your data model, and provides a GraphQL server with an associated set of resolve methods that know how to fetch data.

python-grapheme 0.6.0-0.66f07ca
Channel: ffab
Location: ffab/packages/python-xyz.scm (ffab packages python-xyz)
Home page: https://github.com/alvinlindstam/grapheme
Licenses: Expat
Synopsis: Unicode grapheme helpers
Description:

A Python package for working with user perceived characters. More specifically, string manipulation and calculation functions for working with grapheme cluster groups (graphemes) as defined by the Unicode Standard Annex #29

python-gunicorn 20.1.0
Propagated dependencies: python-setuptools@67.6.1
Channel: rrr
Location: rrr/packages/python-xyz.scm (rrr packages python-xyz)
Home page: https://gunicorn.org
Licenses: Expat
Synopsis: WSGI HTTP Server for UNIX
Description:

Gunicorn 'Green Unicorn' is a Python WSGI HTTP Server for UNIX. It's a pre-fork worker model. The Gunicorn server is broadly compatible with various web frameworks, simply implemented, light on server resources, and fairly speedy.

python-schedule 0.4.3
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/dbader/schedule
Licenses: Expat
Synopsis: Schedule periodic function calls in Python
Description:

Schedule is an in-process scheduler for periodic jobs that uses the builder pattern for configuration. Schedule lets you run Python functions (or any other callable) periodically at pre-determined intervals using a simple, human-friendly syntax.

python-reedsolo 1.5.4
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/tomerfiliba/reedsolomon
Licenses: Public Domain
Synopsis: Pure-Python Reed Solomon encoder/decoder
Description:

A pure-python universal errors-and-erasures Reed-Solomon Codec, based on the tutorial at Wikiversity. This is a burst-type implementation, so that it supports any Galois field higher than 2^3, but not binary streams.

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