This package provides tools for identifying preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Run test/unit tests by line number. Metal!

Bayes screening and model discrimination follow-up designs.

Estimation of quantile regression models for survival data.

This package provides a collection of utility functions.

Automatically suggests a correction when a typo occurs.

Likelihood inference in Gaussian copula marginal regression models.

Compute similarities and distances between marked point processes.

Facilitate extraction of key information from common datasets.

Model-based analysis of single-cell methylation data.

Downloads Southern Oscillation Index, Oceanic Nino Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation and Arctic Oscillation. Data sources are described in the help files for each function.

Programmatic interface to the Web Service methods provided by the National Phenology Network (<https://usanpn.org/>), which includes data on various life history events that occur at specific times.

Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.

Use the <https://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.

This package provides an efficient procedure for fitting the entire solution path for high-dimensional regularized quadratic generalized linear models with interactions effects under the strong or weak heredity constraint.

Implementation of the Artificial Hydrocarbon Networks for data modeling.

Easy estimation of Bayesian multilevel mediation models with Stan.

Evaluate a function over a data frame of expressions.

Estimation for high conditional quantiles based on quantile regression.

An extendable toolkit for interactive data visualization and exploration.

Adds brute force and multiple starting values to nls.

Supports the creation of burndown charts and gantt diagrams.

Miscellaneous functions for analysing species association and niche overlap.

Preprocessing and analysis for single microarrays and microarray batches.