_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-cutools 0.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CUtools
Licenses: GPL 3
Build system: r
Synopsis: Clinical Utility Tools to Analyze a Predictive Model
Description:

Package to analyze the clinical utility of a biomarker. It provides the clinical utility curve, clinical utility table, efficacy of a biomarker, clinical efficacy curve and tests to compare efficacy between markers.

r-cchsflow 2.1.0
Propagated dependencies: r-stringr@1.6.0 r-sjlabelled@1.2.0 r-magrittr@2.0.4 r-haven@2.5.5 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Big-Life-Lab/cchsflow
Licenses: Expat
Build system: r
Synopsis: Transforming and Harmonizing CCHS Variables
Description:

Supporting the use of the Canadian Community Health Survey (CCHS) by transforming variables from each cycle into harmonized, consistent versions that span survey cycles (currently, 2001 to 2018). CCHS data used in this library is accessed and adapted in accordance to the Statistics Canada Open Licence Agreement. This package uses rec_with_table(), which was developed from sjmisc rec(). Lüdecke D (2018). "sjmisc: Data and Variable Transformation Functions". Journal of Open Source Software, 3(26), 754. <doi:10.21105/joss.00754>.

r-covidprobability 0.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/eebrown/covidprobability
Licenses: GPL 3
Build system: r
Synopsis: Estimate the Unit-Wide Probability of COVID-19
Description:

We propose a method to estimate the probability of an undetected case of COVID-19 in a defined setting, when a given number of people have been exposed, with a given pretest probability of having COVID-19 as a result of that exposure. Since we are interested in undetected COVID-19, we assume no person has developed symptoms (which would warrant further investigation) and that everyone was tested on a given day, and all tested negative.

r-crookr 0.1.0
Propagated dependencies: r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/raudep/crookR
Licenses: Expat
Build system: r
Synopsis: Synthetic Crook Deformations in Stem Point Clouds
Description:

Simulates parameterized single- and double-directional stem deformations in tree point clouds derived from terrestrial or mobile laser scanning, enabling the generation of realistic synthetic datasets for training and validating machine learning models in wood defect detection, quality assessment, and precision forestry. For more details see Pires (2025) <doi:10.54612/a.7hln0kr0ta>.

r-cmapss 0.1.1
Propagated dependencies: r-rdpack@2.6.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CMAPSS
Licenses: GPL 3
Build system: r
Synopsis: Commercial Modular Aero-Propulsion System Simulation Data Set
Description:

This package contains the Commercial Modular Aero-Propulsion System Simulation (C-MAPSS) data set.

r-coffee 0.4.3
Propagated dependencies: r-rintcal@1.3.1 r-rice@1.6.2 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Maarten14C/coffee
Licenses: GPL 2+
Build system: r
Synopsis: Chronological Ordering for Fossils and Environmental Events
Description:

While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise. This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). For methods see Christen 2003 <doi:10.11141/ia.13.2>. Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up (Buck, Kenworthy, Litton and Smith 1991 <doi:10.1017/S0003598X00080534>; Nicholls and Jones 2001 <doi:10.1111/1467-9876.00250>). The paper accompanying this R package is Blaauw et al. 2024 <doi:10.1017/RDC.2024.56>.

r-crimedata 0.3.5
Propagated dependencies: r-stringr@1.6.0 r-sf@1.0-23 r-rlang@1.1.6 r-purrr@1.2.0 r-osfr@0.2.9 r-dplyr@1.1.4 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: http://pkgs.lesscrime.info/crimedata/
Licenses: Expat
Build system: r
Synopsis: Access Crime Data from the Open Crime Database
Description:

Gives convenient access to publicly available police-recorded open crime data from large cities in the United States that are included in the Crime Open Database <https://osf.io/zyaqn/>.

r-ctablerseh 1.1.2
Propagated dependencies: r-survey@4.4-8
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ctablerseh
Licenses: GPL 3+
Build system: r
Synopsis: Processing Survey Data with Confidence Intervals Like 'SPSS' Software
Description:

Processes survey data and displays estimation results along with the relative standard error in a table, including the number of samples and also uses a t-distribution approach to compute confidence intervals, similar to SPSS (Statistical Package for the Social Sciences) software.

r-choicedes 0.9-3
Propagated dependencies: r-algdesign@1.2.1.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=choiceDes
Licenses: GPL 2+
Build system: r
Synopsis: Design Functions for Choice Studies
Description:

Design functions for DCMs and other types of choice studies (including MaxDiff and other tradeoffs).

r-cutoff 1.3
Propagated dependencies: r-survival@3.8-3 r-set@1.2 r-rocit@2.1.2 r-do@2.0.0.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/yikeshu0611/cutoff
Licenses: GPL 3
Build system: r
Synopsis: Seek the Significant Cutoff Value
Description:

Seek the significant cutoff value for a continuous variable, which will be transformed into a classification, for linear regression, logistic regression, logrank analysis and cox regression. First of all, all combinations will be gotten by combn() function. Then n.per argument, abbreviated of total number percentage, will be used to remove the combination of smaller data group. In logistic, Cox regression and logrank analysis, we will also use p.per argument, patient percentage, to filter the lower proportion of patients in each group. Finally, p value in regression results will be used to get the significant combinations and output relevant parameters. In this package, there is no limit to the number of cutoff points, which can be 1, 2, 3 or more. Still, we provide 2 methods, typical Bonferroni and Duglas G (1994) <doi: 10.1093/jnci/86.11.829>, to adjust the p value, Missing values will be deleted by na.omit() function before analysis.

r-cxxfunplus 1.0.2
Propagated dependencies: r-inline@0.3.21
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/maverickg/cxxfunplus
Licenses: GPL 3
Build system: r
Synopsis: Extend 'cxxfunction' by Saving the Dynamic Shared Objects
Description:

Extend cxxfunction by saving the dynamic shared objects for reusing across R sessions.

r-chromconverter 0.7.5
Propagated dependencies: r-xml2@1.5.0 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-reticulate@1.44.1 r-readxl@1.4.5 r-rams@1.4.3 r-purrr@1.2.0 r-jsonlite@2.0.0 r-fs@1.6.6 r-digest@0.6.39 r-data-table@1.17.8 r-bitops@1.0-9 r-bit64@4.6.0-1 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://ethanbass.github.io/chromConverter/
Licenses: GPL 3+
Build system: r
Synopsis: Chromatographic File Converter
Description:

Reads chromatograms from binary formats into R objects. Currently supports conversion of Agilent ChemStation', Agilent MassHunter', Shimadzu LabSolutions', ThermoRaw', and Varian Workstation files as well as various text-based formats. In addition to its internal parsers, chromConverter contains bindings to parsers in external libraries, such as Aston <https://github.com/bovee/aston>, Entab <https://github.com/bovee/entab>, rainbow <https://rainbow-api.readthedocs.io/>, and ThermoRawFileParser <https://github.com/compomics/ThermoRawFileParser>.

r-crownsegmentr 1.0.1
Propagated dependencies: r-terra@1.8-86 r-sf@1.0-23 r-rcpp@1.1.0 r-progress@1.2.3 r-lidr@4.2.3 r-dbscan@1.2.3 r-data-table@1.17.8 r-bh@1.87.0-1 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Lenostatos/crownsegmentr
Licenses: GPL 3
Build system: r
Synopsis: Tree Crown Segmentation in Airborne LiDAR Point Clouds
Description:

This package provides a function that performs the adaptive mean shift algorithm for individual tree crown delineation in 3D point clouds as proposed by Ferraz et al. (2016) <doi:10.1016/j.rse.2016.05.028>, as well as supporting functions.

r-ctnote 0.1.0
Propagated dependencies: r-stringr@1.6.0 r-stringi@1.8.7
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://ctn-0094.github.io/CTNote/
Licenses: GPL 3
Build system: r
Synopsis: CTN Outcomes, Treatments, and Endpoints
Description:

The Clinical Trials Network (CTN) of the U.S. National Institute of Drug Abuse sponsored the CTN-0094 research team to harmonize data sets from three nationally-representative clinical trials for opioid use disorder (OUD). The CTN-0094 team herein provides a coded collection of trial outcomes and endpoints used in various OUD clinical trials over the past 50 years. These coded outcome functions are used to contrast and cluster different clinical outcome functions based on daily or weekly patient urine screenings. Note that we abbreviate urine drug screen as "UDS" and urine opioid screen as "UOS". For the example data sets (based on clinical trials data harmonized by the CTN-0094 research team), UDS and UOS are largely interchangeable.

r-corrfuns 1.2
Propagated dependencies: r-rfast2@0.1.5.5 r-rfast@2.1.5.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=corrfuns
Licenses: GPL 2+
Build system: r
Synopsis: Correlation Coefficient Related Functions
Description:

Many correlation coefficient related functions are offered, such as correlations, partial correlations and hypothesis testing using asymptotic tests and computer intensive methods (bootstrap and permutation). References include Mardia K.V., Kent J.T. and Bibby J.M. (1979). "Multivariate Analysis". ISBN: 978-0124712522. London: Academic Press and Owen A. B. (2001). "Empirical likelihood". Chapman and Hall/CRC Press. ISBN: 9781584880714.

r-condensr 1.0.0
Propagated dependencies: r-whisker@0.4.1 r-glue@1.8.0 r-fs@1.6.6 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: http://www.michaellydeamore.com/condensr/
Licenses: Expat
Build system: r
Synopsis: Academic Group Website Generator
Description:

Helps automate Quarto website creation for small academic groups. Builds a database-like structure of people, projects and publications, linking them together with a string-based ID system. Then, provides functions to automate production of clean markdown for these structures, and in-built CSS formatting using CSS flexbox.

r-canprot 2.0.0
Propagated dependencies: r-stringi@1.8.7 r-multcompview@0.1-10
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/jedick/canprot
Licenses: GPL 3
Build system: r
Synopsis: Chemical Analysis of Proteins
Description:

Chemical analysis of proteins based on their amino acid compositions. Amino acid compositions can be read from FASTA files and used to calculate chemical metrics including carbon oxidation state and stoichiometric hydration state, as described in Dick et al. (2020) <doi:10.5194/bg-17-6145-2020>. Other properties that can be calculated include protein length, grand average of hydropathy (GRAVY), isoelectric point (pI), molecular weight (MW), standard molal volume (V0), and metabolic costs (Akashi and Gojobori, 2002 <doi:10.1073/pnas.062526999>; Wagner, 2005 <doi:10.1093/molbev/msi126>; Zhang et al., 2018 <doi:10.1038/s41467-018-06461-1>). A database of amino acid compositions of human proteins derived from UniProt is provided.

r-confcons 0.3.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/bfakos/confcons
Licenses: GPL 3+
Build system: r
Synopsis: Confidence and Consistency of Predictive Distribution Models
Description:

Calculate confidence and consistency that measure the goodness-of-fit and transferability of predictive/potential distribution models (including species distribution models) as described by Somodi & Bede-Fazekas et al. (2024) <doi:10.1016/j.ecolmodel.2024.110667>.

r-chouca 0.1.99
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-plyr@1.8.9 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/alexgenin/chouca
Licenses: GPL 3+
Build system: r
Synopsis: Stochastic Cellular Automaton Engine
Description:

An engine for stochastic cellular automata. It provides a high-level interface to declare a model, which can then be simulated by various backends (Genin et al. (2023) <doi:10.1101/2023.11.08.566206>).

r-cinterpolate 1.0.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/mrc-ide/cinterpolate
Licenses: Expat
Build system: r
Synopsis: Interpolation From C
Description:

Simple interpolation methods designed to be used from C code. Supports constant, linear and spline interpolation. An R wrapper is included but this package is primarily designed to be used from C code using LinkingTo'. The spline calculations are classical cubic interpolation, e.g., Forsythe, Malcolm and Moler (1977) <ISBN: 9780131653320>.

r-cytobankapi 2.2.1
Propagated dependencies: r-uuid@1.2-1 r-jsonlite@2.0.0 r-jose@1.2.1 r-httr@1.4.7 r-curl@7.0.0 r-aws-s3@0.3.22
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CytobankAPI
Licenses: GPL 3
Build system: r
Synopsis: Cytobank API Wrapper for R
Description:

This package provides tools to interface with Cytobank's API via R, organized by endpoints that represent various areas of Cytobank functionality. Learn more about Cytobank at <https://www.beckman.com/flow-cytometry/software>.

r-clustringr 1.0
Propagated dependencies: r-tidygraph@1.3.1 r-stringr@1.6.0 r-stringi@1.8.7 r-stringdist@0.9.15 r-rlang@1.1.6 r-magrittr@2.0.4 r-igraph@2.2.1 r-ggraph@2.2.2 r-ggplot2@4.0.1 r-forcats@1.0.1 r-dplyr@1.1.4 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=clustringr
Licenses: Expat
Build system: r
Synopsis: Cluster Strings by Edit-Distance
Description:

Returns an edit-distance based clusterization of an input vector of strings. Each cluster will contain a set of strings w/ small mutual edit-distance (e.g., Levenshtein, optimum-sequence-alignment, Damerau-Levenshtein), as computed by stringdist::stringdist(). The set of all mutual edit-distances is then used by graph algorithms (from package igraph') to single out subsets of high connectivity.

r-caroline 0.9.9
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=caroline
Licenses: Artistic License 2.0
Build system: r
Synopsis: Collection of Database, Data Structure, Visualization, and Utility Functions for R
Description:

The caroline R library contains dozens of functions useful for: database migration (dbWriteTable2), database style joins & aggregation (nerge, groupBy, & bestBy), data structure conversion (nv, tab2df), legend table making (sstable & leghead), automatic legend positioning for scatter and box plots (), plot annotation (labsegs & mvlabs), data visualization (pies, sparge, confound.grid & raPlot), character string manipulation (m & pad), file I/O (write.delim), batch scripting, data exploration, and more. The package's greatest contributions lie in the database style merge, aggregation and interface functions as well as in it's extensive use and propagation of row, column and vector names in most functions.

r-cgauc 1.2.1
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cgAUC
Licenses: GPL 2+
Build system: r
Synopsis: Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it
Description:

The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.

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Total results: 68655