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r-ls2w 1.3.7
Propagated dependencies: r-wavethresh@4.7.3 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LS2W
Licenses: GPL 2
Build system: r
Synopsis: Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme
Description:

Estimates two-dimensional local wavelet spectra.

r-nets 0.9.1
Propagated dependencies: r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://github.com/ctbrownlees/R-Package-nets
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Network Estimation for Time Series
Description:

Sparse VAR estimation based on LASSO.

r-roar 1.46.0
Propagated dependencies: r-biocgenerics@0.56.0 r-genomeinfodb@1.46.0 r-genomicalignments@1.46.0 r-genomicranges@1.62.0 r-iranges@2.44.0 r-rtracklayer@1.70.0 r-s4vectors@0.48.0 r-summarizedexperiment@1.40.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/vodkatad/roar/
Licenses: GPL 3
Build system: r
Synopsis: Identify differential APA usage from RNA-seq alignments
Description:

This package provides tools for identifying preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

r-rage 1.8.0
Propagated dependencies: r-popdemo@1.3-2 r-mass@7.3-65 r-expm@1.0-0 r-diagrammer@1.0.11
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/jonesor/Rage
Licenses: GPL 3
Build system: r
Synopsis: Life History Metrics from Matrix Population Models
Description:

This package provides functions for calculating life history metrics using matrix population models ('MPMs'). Described in Jones et al. (2021) <doi:10.1101/2021.04.26.441330>.

r-reca 1.7.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://nanx.me/RECA/
Licenses: GPL 3+
Build system: r
Synopsis: Relevant Component Analysis for Supervised Distance Metric Learning
Description:

Relevant Component Analysis (RCA) tries to find a linear transformation of the feature space such that the effect of irrelevant variability is reduced in the transformed space.

r-rcy3 2.30.0
Propagated dependencies: r-base64enc@0.1-3 r-base64url@1.4 r-biocgenerics@0.56.0 r-fs@1.6.6 r-glue@1.8.0 r-gplots@3.2.0 r-graph@1.88.0 r-httr@1.4.7 r-irdisplay@1.1 r-irkernel@1.3.2 r-rcolorbrewer@1.1-3 r-rcurl@1.98-1.17 r-rjsonio@2.0.0 r-stringi@1.8.7 r-uuid@1.2-1 r-xml@3.99-0.20
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/cytoscape/RCy3
Licenses: Expat
Build system: r
Synopsis: Functions to access and control Cytoscape
Description:

Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.

r-rgbm 1.0-11
Propagated dependencies: r-plyr@1.8.9 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RGBM
Licenses: GPL 3+
Build system: r
Synopsis: LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction
Description:

This package provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).

r-rsfa 1.5
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rSFA
Licenses: GPL 2+
Build system: r
Synopsis: Slow Feature Analysis
Description:

Slow Feature Analysis (SFA), ported to R based on matlab implementations of SFA: SFA toolkit 1.0 by Pietro Berkes and SFA toolkit 2.8 by Wolfgang Konen.

r-ivas 2.30.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-matrix@1.7-4 r-lme4@1.1-37 r-iranges@2.44.0 r-ggplot2@4.0.1 r-ggfortify@0.4.19 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-foreach@1.5.2 r-doparallel@1.0.17 r-biocparallel@1.44.0 r-biocgenerics@0.56.0 r-biobase@2.70.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/IVAS
Licenses: GPL 2
Build system: r
Synopsis: Identification of genetic Variants affecting Alternative Splicing
Description:

Identification of genetic variants affecting alternative splicing.

r-ibmq 1.50.0
Dependencies: gsl@2.8
Propagated dependencies: r-ggplot2@4.0.1 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: http://www.rglab.org
Licenses: Artistic License 2.0
Build system: r
Synopsis: integrated Bayesian Modeling of eQTL data
Description:

integrated Bayesian Modeling of eQTL data.

r-brnn 0.9.4
Propagated dependencies: r-truncnorm@1.0-9 r-formula@1.2-5
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://cran.r-project.org/package=brnn
Licenses: GPL 2
Build system: r
Synopsis: Bayesian Regularization for Feed-Forward Neural Networks
Description:

Bayesian regularization for feed-forward neural networks.

r-date 1.2-43
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=date
Licenses: GPL 2
Build system: r
Synopsis: Functions for Handling Dates
Description:

This package provides functions for handling dates.

r-qrcm 3.2
Propagated dependencies: r-survival@3.8-3 r-pch@2.2 r-icenreg@2.0.16
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=qrcm
Licenses: GPL 2
Build system: r
Synopsis: Quantile Regression Coefficients Modeling
Description:

Parametric modeling of quantile regression coefficient functions.

r-rsoi 0.5.7
Propagated dependencies: r-memoise@2.0.1 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://boshek.github.io/rsoi/
Licenses: GPL 3+
Build system: r
Synopsis: Import Various Northern and Southern Hemisphere Climate Indices
Description:

Downloads Southern Oscillation Index, Oceanic Nino Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation and Arctic Oscillation. Data sources are described in the help files for each function.

r-rnpn 1.4.1
Propagated dependencies: r-xml2@1.5.0 r-tidyr@1.3.1 r-tibble@3.3.0 r-rlang@1.1.6 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-jsonlite@2.0.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/usa-npn/rnpn
Licenses: Expat
Build system: r
Synopsis: Interface to the National 'Phenology' Network 'API'
Description:

Programmatic interface to the Web Service methods provided by the National Phenology Network (<https://usanpn.org/>), which includes data on various life history events that occur at specific times.

r-rcas 1.36.0
Dependencies: pandoc@2.19.2
Propagated dependencies: r-biocgenerics@0.56.0 r-biostrings@2.78.0 r-bsgenome@1.78.0 r-bsgenome-hsapiens-ucsc-hg19@1.4.3 r-cowplot@1.2.0 r-data-table@1.17.8 r-dt@0.34.0 r-genomation@1.42.0 r-genomeinfodb@1.46.0 r-genomicfeatures@1.62.0 r-genomicranges@1.62.0 r-ggplot2@4.0.1 r-gprofiler2@0.2.4 r-iranges@2.44.0 r-knitr@1.50 r-pbapply@1.7-4 r-pheatmap@1.0.13 r-plotly@4.11.0 r-plotrix@3.8-13 r-proxy@0.4-27 r-ranger@0.17.0 r-rmarkdown@2.30 r-rsqlite@2.4.4 r-rtracklayer@1.70.0 r-s4vectors@0.48.0 r-seqlogo@1.76.0 r-txdbmaker@1.6.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/BIMSBbioinfo/RCAS
Licenses: Artistic License 2.0
Build system: r
Synopsis: RNA-centric annotation system
Description:

RCAS aims to be a standalone RNA-centric annotation system that provides intuitive reports and publication-ready graphics. This package provides the R library implementing most of the pipeline's features.

r-ramp 2.0.2
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RAMP
Licenses: GPL 2
Build system: r
Synopsis: Regularized Generalized Linear Models with Interaction Effects
Description:

This package provides an efficient procedure for fitting the entire solution path for high-dimensional regularized quadratic generalized linear models with interactions effects under the strong or weak heredity constraint.

r-rcdo 0.3.2
Dependencies: cdo@2.5.1
Propagated dependencies: r-rlang@1.1.6 r-r6@2.6.1 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://eliocamp.github.io/rcdo/
Licenses: GPL 3+
Build system: r
Synopsis: Wrapper of 'CDO' Operators
Description:

This package provides a translation layer between R and CDO operators. Each operator is it's own function with documentation. Nested or piped functions will be translated into CDO chains.

r-rnbp 0.2.2
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7 r-curl@7.0.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/szymanskir/rnbp
Licenses: GPL 3
Build system: r
Synopsis: Wrapper for the National Bank of Poland API
Description:

Use the <https://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.

ruby-m 1.5.1
Propagated dependencies: ruby-method-source@1.0.0 ruby-rake@13.3.0
Channel: gn-bioinformatics
Location: gn/packages/ruby.scm (gn packages ruby)
Home page: https://github.com/qrush/m
Licenses: non-copyleft
Build system: ruby
Synopsis: Run test/unit tests by line number. Metal!
Description:

Run test/unit tests by line number. Metal!

r-affy 1.88.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-affyio@1.80.0 r-biobase@2.70.0 r-biocgenerics@0.56.0 r-biocmanager@1.30.27 r-preprocesscore@1.72.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/affy
Licenses: LGPL 2.0+
Build system: r
Synopsis: Methods for affymetrix oligonucleotide arrays
Description:

This package contains functions for exploratory oligonucleotide array analysis.

ecl-rt 1990.12.19-1.a6a7503
Channel: guix
Location: gnu/packages/lisp-check.scm (gnu packages lisp-check)
Home page: https://www.cliki.net/rt
Licenses: Expat
Build system: asdf/ecl
Synopsis: MIT Regression Tester
Description:

RT provides a framework for writing regression test suites.

r-beat 1.48.0
Propagated dependencies: r-shortread@1.68.0 r-genomicranges@1.62.0 r-bsgenome@1.78.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: https://bioconductor.org/packages/BEAT
Licenses: FSDG-compatible
Build system: r
Synopsis: BEAT - BS-Seq Epimutation Analysis Toolkit
Description:

Model-based analysis of single-cell methylation data.

r-bsmd 2023.920
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://cran.r-project.org/package=BsMD
Licenses: GPL 3+
Build system: r
Synopsis: Bayes Screening and Model Discrimination
Description:

Bayes screening and model discrimination follow-up designs.

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