Estimates two-dimensional local wavelet spectra.

Sparse VAR estimation based on LASSO.

This package provides tools for identifying preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Relevant Component Analysis (RCA) tries to find a linear transformation of the feature space such that the effect of irrelevant variability is reduced in the transformed space.

This package provides functions for calculating life history metrics using matrix population models ('MPMs'). Described in Jones et al. (2021) <doi:10.1101/2021.04.26.441330>.

Vizualize, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape, you can now do with a single RCy3 function.

Slow Feature Analysis (SFA), ported to R based on matlab implementations of SFA: SFA toolkit 1.0 by Pietro Berkes and SFA toolkit 2.8 by Wolfgang Konen.

This package provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).

integrated Bayesian Modeling of eQTL data.

Identification of genetic variants affecting alternative splicing.

Bayesian regularization for feed-forward neural networks.

This package provides functions for handling dates.

Parametric modeling of quantile regression coefficient functions.

Programmatic interface to the Web Service methods provided by the National Phenology Network (<https://usanpn.org/>), which includes data on various life history events that occur at specific times.

Downloads Southern Oscillation Index, Oceanic Nino Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation and Arctic Oscillation. Data sources are described in the help files for each function.

RCAS aims to be a standalone RNA-centric annotation system that provides intuitive reports and publication-ready graphics. This package provides the R library implementing most of the pipeline's features.

Use the <https://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.

This package provides a translation layer between R and CDO operators. Each operator is it's own function with documentation. Nested or piped functions will be translated into CDO chains.

This package provides an efficient procedure for fitting the entire solution path for high-dimensional regularized quadratic generalized linear models with interactions effects under the strong or weak heredity constraint.

Run test/unit tests by line number. Metal!

This package contains functions for exploratory oligonucleotide array analysis.

RT provides a framework for writing regression test suites.

Model-based analysis of single-cell methylation data.

Bayes screening and model discrimination follow-up designs.