This package provides a toolbox for descriptive statistics, based on the computation of frequency and contingency tables. Several statistical functions and plot methods are provided to describe univariate or bivariate distributions of factors, integer series and numerical series either provided as individual values or as bins.

Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.

Build a Dockerfile straight from your R session. dockerfiler allows you to create step by step a Dockerfile, and provide convenient tools to wrap R code inside this Dockerfile.

Measure of agreement delta was originally by Martà n & Femia (2004) <DOI:10.1348/000711004849268>. Since then has been considered as agreement measure for different fields, since their behavior is usually better than the usual kappa index by Cohen (1960) <DOI:10.1177/001316446002000104>. The main issue with delta is that can not be computed by hand contrary to kappa. The current algorithm is based on the Version 5 of the delta windows program that can be found on <https://www.ugr.es/~bioest/software/delta/cmd.php?seccion=downloads>.

This package provides a grammar of data manipulation with data.table', providing a consistent a series of utility functions that help you solve the most common data manipulation challenges.

An extension to the DPQ package with computations for DPQ (Density (pdf), Probability (cdf) and Quantile) functions, where the functions here partly use the Rmpfr package and hence the underlying MPFR and GMP C libraries.

This package provides a tool for manipulating data using the generic formula. A single formula allows to easily add, replace and remove variables before running the analysis.

Flexible and efficient cleaning of data with interactivity. datacleanr facilitates best practices in data analyses and reproducibility with built-in features and by translating interactive/manual operations to code. The package is designed for interoperability, and so seamlessly fits into reproducible analyses pipelines in R'.

DEploid (Zhu et.al. 2018 <doi:10.1093/bioinformatics/btx530>) is designed for deconvoluting mixed genomes with unknown proportions. Traditional phasing programs are limited to diploid organisms. Our method modifies Li and Stephenâ s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting. This package provides R functions to support data analysis and results interpretation.

Dual Scaling, developed by Professor Shizuhiko Nishisato (1994, ISBN: 0-9691785-3-6), is a fundamental technique in multivariate analysis used for data scaling and correspondence analysis. Its utility lies in its ability to represent multidimensional data in a lower-dimensional space, making it easier to visualize and understand underlying patterns in complex data. This technique has been implemented to handle various types of data, including Contingency and Frequency data (CF), Multiple-Choice data (MC), Sorting data (SO), Paired-Comparison data (PC), and Rank-Order data (RO), providing users with a powerful tool to explore relationships between variables and observations in various fields, from sociology to ecology, enabling deeper and more efficient analysis of multivariate datasets.

Access and manage the application programming interface (API) of the United Nations Office for the Coordination of Humanitarian Affairs (OCHA) ReliefWeb disaster events at <https://reliefweb.int/disasters>. The package requires a minimal number of dependencies. It offers functionality to retrieve a user-defined sample of disaster events from ReliefWeb, providing an easy alternative to scraping the ReliefWeb website. It enables a seamless integration of regular data updates into the research work flow.

Parse, format, and validate international phone numbers using Google's libphonenumber java library, <https://github.com/google/libphonenumber>.

Extends package distr by functionals, distances, and conditional distributions.

This package provides a R driver for Apache Drill<https://drill.apache.org>, which could connect to the Apache Drill cluster<https://drill.apache.org/docs/installing-drill-on-the-cluster> or drillbit<https://drill.apache.org/docs/embedded-mode-prerequisites> and get result(in data frame) from the SQL query and check the current configuration status. This link <https://drill.apache.org/docs> contains more information about Apache Drill.

Main function "decode" is used to decode coded key values to plain text. Function "code" can be used to code plain text to code if there is a 1:1 relation between the two. The concept relies on keyvalue objects used for translation. There are several keyvalue objects included in the areas of geographical regional codes, administrative health care unit codes, diagnosis codes and more. It is also easy to extend the use by arbitrary code sets.

Produce publication quality graphics from output of GGobi describe display plugin.

This package provides a Shiny Input for date-ranges, which pops up two calendars for selecting dates, times, or predefined ranges like "Last 30 Days". It wraps the JavaScript library daterangepicker which is available at <https://www.daterangepicker.com>.

Divide taxonomic occurrence data into geographic regions of fair comparison, with three customisable methods to standardise area and extent. Calculate common biodiversity and range-size metrics on subsampled data. Background theory and practical considerations for the methods are described in Antell and others (2024) <doi:10.1017/pab.2023.36>.

Allows manual creation of themes and logos to be used in applications created using the shinydashboard package. Removes the need to change the underlying css code by wrapping it into a set of convenient R functions.

Phone numbers are often represented as strings because there is no obvious and suitable native representation for them. This leads to high memory use and a lack of standard representation. The package provides integer representation of Australian phone numbers with optional raw vector calling code. The package name is an extension of au and ph'.

Several tests for differential methylation in methylation array data, including one-sided differential mean and variance test. Methods used in the package refer to Dai, J, Wang, X, Chen, H and others (2021) "Incorporating increased variability in discovering cancer methylation markers", Biostatistics, submitted.

Visualizes variables from descriptive tables produced by descsuppR::buildDescrTbl() using ggstatsplot'. It automatically maps each variable to a suitable ggstatsplot plotting function based on the applied or suggested statistical test. Users can override the automatic mapping via a named list of plot specifications. The package supports grouped and ungrouped tables, and forwards additional arguments to the underlying ggstatsplot functions, providing quick, reproducible, and customizable default visualizations for descriptive summaries.

Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>. divent provides functions to estimate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.

Efficient methods for computing distance covariance and relevant statistics. See Székely et al.(2007) <doi:10.1214/009053607000000505>; Székely and Rizzo (2013) <doi:10.1016/j.jmva.2013.02.012>; Székely and Rizzo (2014) <doi:10.1214/14-AOS1255>; Huo and Székely (2016) <doi:10.1080/00401706.2015.1054435>.