Panflute is a Python package that makes Pandoc filters fun to write. It is a pythonic alternative to John MacFarlane's pandocfilters, from which it is heavily inspired.

cleanlab automatically finds and fixes errors in any ML dataset. This data-centric AI package facilitates machine learning with messy, real-world data by providing clean labels during training.

cleanlab automatically finds and fixes errors in any ML dataset. This data-centric AI package facilitates machine learning with messy, real-world data by providing clean labels during training.

identify is a file identification library for Python. Given a file (or some information about a file), return a set of standardized tags identifying what the file is.

Curtsies is a Python library for interacting with the terminal. It features string-like objects which carry formatting information, per-line fullscreen terminal rendering, and keyboard input event reporting.

This Python extension module manipulates the POSIX.1e ACLs available on many file systems. These allow more fine-grained access control than traditional user/group permissions.

Baseband is a package for reading and writing VLBI and other radio baseband files, with the aim of simplifying and streamlining data conversion and standardization.

This is a library package for use by pytest-cov, nose-cov and nose2-cov. It is useful for developing coverage plugins for these testing frameworks.

This is the Python extension to usbrelay, a Linux driver based on hidapi for a variety of inexpensive HID compatible USB relay modules. This package also includes usbrelayd.

PyMsgBox is a simple, cross-platform, pure Python module for JavaScript-like message boxes. Types of dialog boxes include:

1. alert

2. confirm

3. prompt

4. password

GeoViews is a Python library that makes it easy to explore and visualize geographical, meteorological, and oceanographic datasets, such as those used in weather, climate, and remote sensing research.

The oslo.log (logging) configuration library provides standardized configuration for all OpenStack projects. It also provides custom formatters, handlers and support for context specific logging (like resource id’s etc).

Colossus is a Python toolkit for calculations pertaining to cosmology, the large-scale structure of the universe, and the properties of dark matter halos.

This package provides a PEP 518 build backend that uses setuptools_scm to generate a version file from your version control system, then flit_core to build the package.

This is a set of python bindings for keyutils, a key management suite that leverages the infrastructure provided by the Linux kernel for safely storing and retrieving sensitive information in your programs.

Yamllint is a linter for YAML files. yamllint does not only check for syntax validity, but for weirdnesses like key repetition and cosmetic problems such as lines length, trailing spaces, indentation, etc.

This package implements a preferred system exit codes as defined by sysexits.h. This library is inspired by Rust's exitcode.

WhatsHap is software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

SlamDunk is a fully automated tool for automated, robust, scalable and reproducible SLAMseq data analysis. Diagnostic plotting features and a MultiQC plugin will make your SLAMseq data ready for immediate QA and interpretation.

This Python package provides progress reporting for visual of progress of long running operations. There are multiple choices of progress bars and spinners, with customizable options, such as width, fill character, and suffix.

pyserial provide serial port bindings for Python. It supports different byte sizes, stop bits, parity and flow control with RTS/CTS and/or Xon/Xoff. The port is accessed in RAW mode.

Lfdfiles is a Python library and console script for reading, writing, converting, and viewing many of the proprietary file formats used to store experimental data and metadata at the Laboratory for Fluorescence Dynamics.

This package provides a converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler). Both hic and cool files describe Hi-C contact matrices.

Coverage measures code coverage, typically during test execution. It uses the code analysis tools and tracing hooks provided in the Python standard library to determine which lines are executable, and which have been executed.