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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel search send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-chapgwas 0.1.3
Propagated dependencies: r-plyr@1.8.9 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CHAPGWAS
Licenses: GPL 3
Build system: r
Synopsis: CHAP-GWAS: Leveraging Chromosomal Haplotypes to Improve Genome-Wide Association Studies
Description:

CHAP-GWAS (Chromosomal Haplotype-Integrated Genome-Wide Association Study) provides a dynamically adaptive framework for genome-wide association studies (GWAS) that integrates chromosome-scale haplotypes with single nucleotide polymorphism (SNP) analysis. The method identifies and extends haplotype variants based on their phenotypic associations rather than predefined linkage blocks, enabling high-resolution detection of quantitative trait loci (QTL). By leveraging long-range phased haplotype information, CHAP-GWAS improves statistical power and offers a more comprehensive view of the genetic architecture underlying complex traits.

r-clickr 0.9.45
Propagated dependencies: r-stringdist@0.9.17 r-future-apply@1.20.2 r-future@1.70.0 r-beeswarm@0.4.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=clickR
Licenses: GPL 2+
Build system: r
Synopsis: Semi-Automatic Preprocessing of Messy Data with Change Tracking for Dataset Cleaning
Description:

This package provides tools for assessing data quality, performing exploratory analysis, and semi-automatic preprocessing of messy data with change tracking for integral dataset cleaning.

r-cnid 2.1.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/chuxinyuan/cnid
Licenses: Expat
Build system: r
Synopsis: Get Basic Information from Chinese ID Number
Description:

The Chinese ID number contains a lot of information, this package helps you get the region, date of birth, age, age based on year, gender, zodiac, constellation information from the Chinese ID number.

r-conversim 0.1.0
Propagated dependencies: r-word2vec@0.4.1 r-topicmodels@0.2-17 r-tm@0.7-18 r-slam@0.1-55 r-sentimentr@2.9.0 r-lsa@0.73.4 r-lme4@2.0-1 r-ggplot2@4.0.3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/chaoliu-cl/conversim
Licenses: GPL 3+
Build system: r
Synopsis: Conversation Similarity Analysis
Description:

Analyze and compare conversations using various similarity measures including topic, lexical, semantic, structural, stylistic, sentiment, participant, and timing similarities. Supports both pairwise conversation comparisons and analysis of multiple dyads. Methods are based on established research: Topic modeling: Blei et al. (2003) <doi:10.1162/jmlr.2003.3.4-5.993>; Landauer et al. (1998) <doi:10.1080/01638539809545028>; Lexical similarity: Jaccard (1912) <doi:10.1111/j.1469-8137.1912.tb05611.x>; Semantic similarity: Salton & Buckley (1988) <doi:10.1016/0306-4573(88)90021-0>; Mikolov et al. (2013) <doi:10.48550/arXiv.1301.3781>; Pennington et al. (2014) <doi:10.3115/v1/D14-1162>; Structural and stylistic analysis: Graesser et al. (2004) <doi:10.1075/target.21131.ryu>; Sentiment analysis: Rinker (2019) <https://github.com/trinker/sentimentr>.

r-corlink 1.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=corlink
Licenses: CC0
Build system: r
Synopsis: Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
Description:

This package provides a matrix of agreement patterns and counts for record pairs is the input for the procedure. An EM algorithm is used to impute plausible values for missing record pairs. A second EM algorithm, incorporating possible correlations between per-field agreement, is used to estimate posterior probabilities that each pair is a true match - i.e. constitutes the same individual.

r-crossvalidationcp 1.1
Propagated dependencies: r-wbs@1.4.1 r-fpopw@1.1 r-changepoint@2.3
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=crossvalidationCP
Licenses: GPL 3
Build system: r
Synopsis: Cross-Validation for Change-Point Regression
Description:

This package implements the cross-validation methodology from Pein and Shah (2021) <arXiv:2112.03220>. Can be customised by providing different cross-validation criteria, estimators for the change-point locations and local parameters, and freely chosen folds. Pre-implemented estimators and criteria are available. It also includes our own implementation of the COPPS procedure <doi:10.1214/19-AOS1814>.

r-ccp 1.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CCP
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Significance Tests for Canonical Correlation Analysis (CCA)
Description:

Significance tests are provided for canonical correlation analysis, including asymptotic tests and a Monte Carlo method.

r-cytobankapi 2.2.1
Propagated dependencies: r-uuid@1.2-2 r-jsonlite@2.0.0 r-jose@2.0.0 r-httr@1.4.8 r-curl@7.1.0 r-aws-s3@0.3.22
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CytobankAPI
Licenses: GPL 3
Build system: r
Synopsis: Cytobank API Wrapper for R
Description:

This package provides tools to interface with Cytobank's API via R, organized by endpoints that represent various areas of Cytobank functionality. Learn more about Cytobank at <https://www.beckman.com/flow-cytometry/software>.

r-cnps 1.0.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CNPS
Licenses: GPL 2
Build system: r
Synopsis: Nonparametric Statistics
Description:

We unify various nonparametric hypothesis testing problems in a framework of permutation testing, enabling hypothesis testing on multi-sample, multidimensional data and contingency tables. Most of the functions available in the R environment to implement permutation tests are single functions constructed for specific test problems; to facilitate the use of the package, the package encapsulates similar tests in a categorized manner, greatly improving ease of use. We will all provide functions for self-selected permutation scoring methods and self-selected p-value calculation methods (asymptotic, exact, and sampling). For two-sample tests, we will provide mean tests and estimate drift sizes; we will provide tests on variance; we will provide paired-sample tests; we will provide correlation coefficient tests under three measures. For multi-sample problems, we will provide both ordinary and ordered alternative test problems. For multidimensional data, we will implement multivariate means (including ordered alternatives) and multivariate pairwise tests based on four statistics; the components with significant differences are also calculated. For contingency tables, we will perform permutation chi-square test or ordered alternative.

r-cklrt 0.2.3
Propagated dependencies: r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.1-1.1 r-nlme@3.1-169 r-mgcv@1.9-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CKLRT
Licenses: GPL 3
Build system: r
Synopsis: Composite Kernel Machine Regression Based on Likelihood Ratio Test
Description:

Composite Kernel Machine Regression based on Likelihood Ratio Test (CKLRT): in this package, we develop a kernel machine regression framework to model the overall genetic effect of a SNP-set, considering the possible GE interaction. Specifically, we use a composite kernel to specify the overall genetic effect via a nonparametric function and we model additional covariates parametrically within the regression framework. The composite kernel is constructed as a weighted average of two kernels, one corresponding to the genetic main effect and one corresponding to the GE interaction effect. We propose a likelihood ratio test (LRT) and a restricted likelihood ratio test (RLRT) for statistical significance. We derive a Monte Carlo approach for the finite sample distributions of LRT and RLRT statistics. (N. Zhao, H. Zhang, J. Clark, A. Maity, M. Wu. Composite Kernel Machine Regression based on Likelihood Ratio Test with Application for Combined Genetic and Gene-environment Interaction Effect (Submitted).).

r-ceriolioutlierdetection 1.1.15
Propagated dependencies: r-robustbase@0.99-7
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://christopherggreen.github.io/CerioliOutlierDetection/
Licenses: GPL 2+
Build system: r
Synopsis: Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
Description:

This package implements the iterated RMCD method of Cerioli (2010) for multivariate outlier detection via robust Mahalanobis distances. Also provides the finite-sample RMCD method discussed in the paper, as well as the methods provided in Hardin and Rocke (2005) <doi:10.1198/106186005X77685> and Green and Martin (2017) <https://christopherggreen.github.io/papers/hr05_extension.pdf>. See also Chapter 2 of Green (2017) <https://digital.lib.washington.edu/researchworks/handle/1773/40304>.

r-cormid 0.3.1
Propagated dependencies: r-rcpp@1.1.1-1.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/janlisec/CorMID
Licenses: GPL 3+
Build system: r
Synopsis: Correct Mass Isotopologue Distribution Vectors
Description:

In metabolic flux experiments tracer molecules (often glucose containing labelled carbon) are incorporated in compounds measured using mass spectrometry. The mass isotopologue distributions of these compounds needs to be corrected for natural abundance of labelled carbon and other effects, which are specific on the compound and ionization technique applied. This package provides functions to correct such effects in gas chromatography atmospheric pressure chemical ionization mass spectrometry analyses.

r-chnosz 2.3.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://chnosz.net/
Licenses: GPL 3
Build system: r
Synopsis: Thermodynamic Calculations and Diagrams for Geochemistry
Description:

An integrated set of tools for thermodynamic calculations in aqueous geochemistry and geobiochemistry. Functions are provided for writing balanced reactions to form species from user-selected basis species and for calculating the standard molal properties of species and reactions, including the standard Gibbs energy and equilibrium constant. Calculations of the non-equilibrium chemical affinity and equilibrium chemical activity of species can be portrayed on diagrams as a function of temperature, pressure, or activity of basis species; in two dimensions, this gives a maximum affinity or predominance diagram. The diagrams have formatted chemical formulas and axis labels, and water stability limits can be added to Eh-pH, oxygen fugacity- temperature, and other diagrams with a redox variable. The package has been developed to handle common calculations in aqueous geochemistry, such as solubility due to complexation of metal ions, mineral buffers of redox or pH, and changing the basis species across a diagram ("mosaic diagrams"). CHNOSZ also implements a group additivity algorithm for the standard thermodynamic properties of proteins.

r-cladorcpp 0.15.1
Propagated dependencies: r-rcpparmadillo@15.2.6-1 r-rcpp@1.1.1-1.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: http://phylo.wikidot.com/biogeobears
Licenses: GPL 2+
Build system: r
Synopsis: C++ Implementations of Phylogenetic Cladogenesis Calculations
Description:

Various cladogenesis-related calculations that are slow in pure R are implemented in C++ with Rcpp. These include the calculation of the probability of various scenarios for the inheritance of geographic range at the divergence events on a phylogenetic tree, and other calculations necessary for models which are not continuous-time markov chains (CTMC), but where change instead occurs instantaneously at speciation events. Typically these models must assess the probability of every possible combination of (ancestor state, left descendent state, right descendent state). This means that there are up to (# of states)^3 combinations to investigate, and in biogeographical models, there can easily be hundreds of states, so calculation time becomes an issue. C++ implementation plus clever tricks (many combinations can be eliminated a priori) can greatly speed the computation time over naive R implementations. CITATION INFO: This package is the result of my Ph.D. research, please cite the package if you use it! Type: citation(package="cladoRcpp") to get the citation information.

r-casecohortcoxsurvival 0.0.36
Propagated dependencies: r-survival@3.8-6 r-nnet@7.3-20
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CaseCohortCoxSurvival
Licenses: GPL 2
Build system: r
Synopsis: Case-Cohort Cox Survival Inference
Description:

Cox model inference for relative hazard and covariate-specific pure risk estimated from stratified and unstratified case-cohort data as described in Etievant, L., Gail, M.H. (Lifetime Data Analysis, 2024) <doi:10.1007/s10985-024-09621-2>.

r-comparator 0.1.4
Propagated dependencies: r-rcpp@1.1.1-1.1 r-proxy@0.4-29 r-clue@0.3-68
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/ngmarchant/comparator
Licenses: GPL 2+
Build system: r
Synopsis: Comparison Functions for Clustering and Record Linkage
Description:

This package implements functions for comparing strings, sequences and numeric vectors for clustering and record linkage applications. Supported comparison functions include: generalized edit distances for comparing sequences/strings, Monge-Elkan similarity for fuzzy comparison of token sets, and L-p distances for comparing numeric vectors. Where possible, comparison functions are implemented in C/C++ to ensure good performance.

r-cargo 0.4.9
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/dbdahl/cargo-framework
Licenses: Expat ASL 2.0
Build system: r
Synopsis: Develop R Packages using Rust
Description:

This package provides a framework is provided to develop R packages using Rust <https://www.rust-lang.org/> with minimal overhead, and more wrappers are easily added. Help is provided to use Cargo <https://doc.rust-lang.org/cargo/> in a manner consistent with CRAN policies. Rust code can also be embedded directly in an R script. The package is not official, affiliated with, nor endorsed by the Rust project.

r-crawlee 0.1.0
Propagated dependencies: r-xml2@1.5.2 r-vctrs@0.7.3 r-tibble@3.3.1 r-rvest@1.0.5 r-rlang@1.2.0 r-r6@2.6.1 r-httr2@1.2.2 r-cli@3.6.6
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/StrategicProjects/crawlee
Licenses: Expat
Build system: r
Synopsis: Tidy Interface for Reproducible Web Crawling
Description:

This package provides a tidy, pipe-friendly toolkit for reproducible web crawling and structured data collection, inspired by the architecture of the Crawlee library. Provides a unified crawler with a deduplicating, resumable request queue, content-type aware handlers, structured storage backends and rich console logging via cli'. Supports crawling HTML pages, sitemaps, RSS and Atom feeds and PDF documents, with optional headless-browser rendering and helpers for retrieval-augmented generation.

r-casimir 0.3.3
Propagated dependencies: r-withr@3.0.2 r-tidyr@1.3.2 r-stringr@1.6.0 r-rsample@1.3.2 r-rlang@1.2.0 r-purrr@1.2.2 r-options@0.3.1 r-furrr@0.4.0 r-dplyr@1.2.1 r-collapse@2.1.7
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://deutsche-nationalbibliothek.github.io/casimir/
Licenses: Expat
Build system: r
Synopsis: Comparing Automated Subject Indexing Methods in R
Description:

Perform evaluation of automatic subject indexing methods. The main focus of the package is to enable efficient computation of set retrieval and ranked retrieval metrics across multiple dimensions of a dataset, e.g. document strata or subsets of the label set. The package also provides the possibility of computing bootstrap confidence intervals for all major metrics, with seamless integration of parallel computation and propensity scored variants of standard metrics.

r-coala 0.7.2
Propagated dependencies: r-scrm@1.7.5 r-rehh@3.2.3 r-rcpparmadillo@15.2.6-1 r-rcpp@1.1.1-1.1 r-r6@2.6.1 r-digest@0.6.39 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/statgenlmu/coala
Licenses: Expat
Build system: r
Synopsis: Framework for Coalescent Simulation
Description:

Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results (Staab, Metzler, 2016 <doi:10.1093/bioinformatics/btw098>). It relies on existing simulators for doing the simulation, and currently supports the programs ms', msms and scrm'. It also supports finite-sites mutation models by combining the simulators with the program seq-gen'. Coala provides functions for calculating certain summary statistics, which can also be applied to actual biological data. One possibility to import data is through the PopGenome package (<https://github.com/pievos101/PopGenome>).

r-codestral 0.0.2
Propagated dependencies: r-stringr@1.6.0 r-rstudioapi@0.18.0 r-magrittr@2.0.5 r-jsonlite@2.0.0 r-httr@1.4.8 r-dplyr@1.2.1
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://urbs-dev.github.io/codestral/
Licenses: Expat
Build system: r
Synopsis: Chat and FIM with 'Codestral'
Description:

Create an addin in Rstudio to do fill-in-the-middle (FIM) and chat with latest Mistral AI models for coding, Codestral and Codestral Mamba'. For more details about Mistral AI API': <https://docs.mistral.ai/getting-started/quickstart/> and <https://docs.mistral.ai/api/>. For more details about Codestral model: <https://mistral.ai/news/codestral>; about Codestral Mamba': <https://mistral.ai/news/codestral-mamba>.

r-clickstream 1.3.4
Propagated dependencies: r-rsolnp@2.0.1 r-reshape2@1.4.5 r-plyr@1.8.9 r-mass@7.3-65 r-linprog@0.9-6 r-igraph@2.3.1 r-ggplot2@4.0.3 r-data-table@1.18.4 r-clickclust@1.1.6 r-arules@1.7.14
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=clickstream
Licenses: GPL 2
Build system: r
Synopsis: Analyzes Clickstreams Based on Markov Chains
Description:

This package provides a set of tools to read, analyze and write lists of click sequences on websites (i.e., clickstream). A click can be represented by a number, character or string. Clickstreams can be modeled as zero- (only computes occurrence probabilities), first- or higher-order Markov chains.

r-crookr 0.1.0
Propagated dependencies: r-data-table@1.18.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/raudep/crookR
Licenses: Expat
Build system: r
Synopsis: Synthetic Crook Deformations in Stem Point Clouds
Description:

Simulates parameterized single- and double-directional stem deformations in tree point clouds derived from terrestrial or mobile laser scanning, enabling the generation of realistic synthetic datasets for training and validating machine learning models in wood defect detection, quality assessment, and precision forestry. For more details see Pires (2025) <doi:10.54612/a.7hln0kr0ta>.

r-cgvr 0.1.2
Dependencies: pkg-config@0.29.2
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/Zabis13/cgvR
Licenses: Expat
Build system: r
Synopsis: Interactive 3D Visualization of Large Cayley Graphs via Vulkan
Description:

This package provides interactive 3D visualization for large-scale Cayley graphs. Specifically designed for analyzing state spaces of the TopSpin puzzle. Leverages the Datoviz library and Vulkan-based GPU rendering for smooth real-time exploration of large graphs and complex state transitions. Implements efficient coordinate mapping for high-dimensional permutation groups, allowing users to visualize the connectivity and structural properties of the puzzle's state space. The rendering engine provides high-performance visuals and interactive camera controls, making it suitable for mathematical analysis of group-theoretic puzzles within the R environment.

Total packages: 73977