This package infers and discriminates RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.
This package provides Implementations of string similarity metrics. Includes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro, Jaro-Winkler, and Sørensen-Dice.
Helper functions for working with Regional Ocean Modeling System ROMS output. See <https://www.myroms.org/> for more information about ROMS'.
Collect your data on digital marketing campaigns from Apple Search Ads using the Windsor.ai API <https://windsor.ai/api-fields/>.
Detect several types of aberrant behavior, including answer copying, answer similarity, nonparametric misfit, parametric misfit, preknowledge, rapid guessing, and test tampering.
Computation of bootstrap p-values through inversion of confidence intervals, including convenience functions for regression models and tests of location.
US baby names provided by the SSA. This package contains all names used for at least 5 children of either sex.
Calculates metrics of proportionality using the logit-normal multinomial model. It can also provide empirical and plugin estimates of these metrics.
Generate and analyse crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
This package provides a set of pricing and expository functions that should be useful in teaching a course on financial derivatives.
Simple functions to deflate nominal Brazilian Reais using several popular price indexes downloaded from the Brazilian Institute for Applied Economic Research.
Generate descriptive statistics such as measures of location, dispersion, frequency tables, cross tables, group summaries and multiple one/two way tables.
Data sets from the book "Forecasting with exponential smoothing: the state space approach" by Hyndman, Koehler, Ord and Snyder (Springer, 2008).
Implementation of various inference and simulation tools to apply generalized additive models to bivariate dependence structures and non-simplified vine copulas.
Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <https://www.tesourodireto.com.br/>.
The aim of the package is to create data objects which allow for accesses like x["test"] and x["test","test"].
This package provides a set of tools to extract bibliographic content from OpenAlex database using API <https://docs.openalex.org>.
Interfaces the stepcount Python module <https://github.com/OxWearables/stepcount> to estimate step counts and other activities from accelerometry data.
This package provides functions for converting and processing network data from a SpatialLinesDataFrame -Class object to an igraph'-Class object.
This package provides a tidy interface to data.table', giving users the speed of data.table while using tidyverse-like syntax.
This package provides an array-like container for convenient access and manipulation of HDF5 datasets. It supports delayed operations and block processing.
This package provides methods and functionality to analyze flow data that is beyond the basic infrastructure provided by the flowCore package.
This package provides functions to estimate a bipartite graph of protein complex membership using AP-MS data.
This package provides dataset samples (Affymetrix: Expression, Gene, Exon, SNP; NimbleGen: Expression, Tiling) to be used with the oligo package.