This package provides tools to identify cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection.

The r-zoeppritz package calculates and plots scattering matrix coefficients or scattering amplitudes, for seismological P and S-waves at an interface.

This package is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.

BOOST-RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracking VM.

Loofah is a general library for manipulating and transforming HTML/XML documents and fragments. It's built on top of Nokogiri and libxml2.

Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.

Measure single-storage water supply system performance using resilience, reliability, and vulnerability metrics; assess storage-yield-reliability relationships; determine no-fail storage with sequent peak analysis; optimize release decisions for water supply, hydropower, and multi-objective reservoirs using deterministic and stochastic dynamic programming; generate inflow replicates using parametric and non-parametric models; evaluate inflow persistence using the Hurst coefficient.

This package provides an RNA-seq workflow for differential transcript usage (DTU) following Salmon quantification. This workflow performs a DTU analysis on simulated data. It also shows how to use stageR to perform two-stage testing of DTU, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU.

This package provides a programmatic interface to FishBase', re-written based on an accompanying RESTful API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to SeaLifeBase data, which contains nearly 200,000 species records for all types of aquatic life not covered by FishBase.'.

Reads river network shape files and computes network distances. Also included are a variety of computation and graphical tools designed for fisheries telemetry research, such as minimum home range, kernel density estimation, and clustering analysis using empirical k-functions with a bootstrap envelope. Tools are also provided for editing the river networks, meaning there is no reliance on external software.

Detect several types of aberrant behavior, including answer copying, answer similarity, change point, nonparametric misfit, parametric misfit, preknowledge, rapid guessing, and test tampering.

This package provides a developing software suite for multiple change-point and change-point-type feature detection/estimation (data segmentation) in data sequences.

Connect to the DocuSign Rest API <https://www.docusign.com/p/RESTAPIGuide/RESTAPIGuide.htm>, which supports embedded signing, and sending of documents.

Computes temporal trends in environmental suitability obtained from ecological niche models, based on a set of species presence point coordinates and predictor variables.

This package performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.

Allows users to generate a gendered language score according to the gendered language dictionary in Roberts and Utych (2019) <doi:10.1177/1065912919874883>.

Spatial data plus the power of the ggplot2 framework means easier mapping when input data are already in the form of spatial objects.

Tests of goodness-of-fit based on a kernel smoothing of the data. References: Pavà a (2015) <doi:10.18637/jss.v066.c01>.

Model and estimate the model parameters for the spatial model of individual-level infectious disease transmission in Susceptible-Infected-Recovered (SIR) framework.

Health Calculator helps to find different parameters like basal metabolic rate, body mass index etc. related to fitness and health of a person.

Various tools and data sets that support the study of kanji, including their morphology, decomposition and concepts of distance and similarity between them.

Find common entities detected in both positive and negative ionization mode, delete this entity in the less sensible mode and combine both matrices.

This package implements various simple function utilities and flexible pipelines to generate circular images for visualizing complex genomic and network data analysis features.

Includes functions for keyword search of pdf files. There is also a wrapper that includes searching of all files within a single directory.