This package provides a test for the existence of a subgroup with enhanced treatment effect. And, a sample size calculation procedure for the subgroup detection test.

Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symptom based administration of diagnostic tests. <doi:10.1101/2020.09.24.20200238>.

This package provides ggplot2 graphics for analysing time series data. It aims to fit into the tidyverse and grammar of graphics framework for handling temporal data.

Simplify reporting many tables by creating tibbles of tables. With tabtibble', a tibble of tables is created with captions and automatic printing using knit_print()'.

This package provides functions to access historical and real-time national hydrometric data from Water Survey of Canada data sources and then applies tidy data principles.

Consistent with knitr syntax highlighting, usedthese adds a summary table of package & function usage to a Quarto document and enables aggregation of usage across a website.

This package provides access to the Vagalume API <https://api.vagalume.com.br>. The data extracted is basically lyrics of songs and information about artists/bands.

Apply Wordpiece (<arXiv:1609.08144>) tokenization to input text, given an appropriate vocabulary. The BERT (<arXiv:1810.04805>) tokenization conventions are used by default.

CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.

This package provides tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

This package provides a method for combining single-cell cytometry datasets, which increases the analytical flexibility and the statistical power of the analyses while minimizing technical noise.

This package provides a common interface to specifying clustering models, in the same style as parsnip. It creates a unified interface across different functions and computational engines.

This package provides various tools for creating iterators, many patterned after functions in the Python itertools module, and others patterned after functions in the snow package.

Cl-reexport makes a package reexport symbols which are external symbols in other Common Lisp packages. This functionality is intended to be used with (virtual) hierarchical packages.

wf-recorder is a utility program for screen recording of wlroots-based compositors. More specifically, those that support wlr-screencopy-v1 and xdg-output.

This package provides functions to safely map from a vector of keys to a vector of values, determine properties of a given relation, or ensure a relation conforms to a given type, such as many-to-many, one-to-many, injective, surjective, or bijective. Permits default return values for use similar to a vectorised switch statement, as well as safely handling large vectors, NAs, and duplicate mappings.

This package provides an easy way to report the results of ROC analysis, including: 1. an ROC curve. 2. the value of Cutoff, AUC (Area Under Curve), ACC (accuracy), SEN (sensitivity), SPE (specificity), PLR (positive likelihood ratio), NLR (negative likelihood ratio), PPV (positive predictive value), NPV (negative predictive value), PPA (percentage of positive accordance), NPA (percentage of negative accordance), TPA (percentage of total accordance), KAPPA (kappa value).

Robust generalized linear models (GLM) using a mixture method, as described in Beath (2018) <doi:10.1080/02664763.2017.1414164>. This assumes that the data are a mixture of standard observations, being a generalised linear model, and outlier observations from an overdispersed generalized linear model. The overdispersed linear model is obtained by including a normally distributed random effect in the linear predictor of the generalized linear model.

Calculates relevance and significance values for simple models and for many types of regression models. These are introduced in Stahel, Werner A. (2021) "Measuring Significance and Relevance instead of p-values." <https://stat.ethz.ch/~stahel/relevance/stahel-relevance2103.pdf>. These notions are also applied to replication studies, as described in the manuscript Stahel, Werner A. (2022) "'Replicability': Terminology, Measuring Success, and Strategy" available in the documentation.

Visualization platform for T cell receptor repertoire analysis output results. It includes comparison of sequence frequency among samples, network of similar sequences and convergent recombination source between species. Currently repertoire analysis is in early stage of development and requires new approaches for repertoire data examination and assessment as we intend to develop. No publication is available yet (will be available in the near future), Efroni (2021) <https:>.

int64 values can be created and accessed via the bit64 package and its integer64 class which package the int64 representation cleverly into a double. The nanotime package builds on this to support nanosecond-resolution timestamps. This package helps conversions between R and C++ via several helper functions provided via a single header file. A complete example client package is included as an illustration.

This package provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and Pseudo R Square. Aberson, C. L. (2022) <doi:10.31234/osf.io/s2yqn>.

This package provides a simple countdown timer for slides and HTML documents written in R Markdown or Quarto'. Integrates fully into Shiny apps. Countdown to something amazing.

The data and meta data from Statistics Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses the open data API of Statistics Netherlands.