This package provides methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers.

This is a package for parallel computing with a network of local and remote workers. It enables fast exchange of results between the workers through a Redis database. Key features include task queues, local caching, and sophisticated error handling.

This package finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library. It provides approximate, exact searches, fixed radius searches, bd and kb trees.

This package provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

This package provides apply-style functions using the Message Passing Interface ('MPI') to improve the High-Performance Computing ('HPC') environment in R. The package supports long vectors and efficient handling of large datasets for MPI-based parallel computations.

Convenience functions to make some common tasks with right-to-left string printing easier, more convenient and with no need to remember long Unicode characters. Specifically helpful for right-to-left languages such as Arabic, Persian and Hebrew.

Pointwise generation and display of attractors (prefractals) of the random iterated function system (RIFS) for various combinations of probabilistic and geometric parameters of some fixed point sets (protofractals), described by Bukhovets A.G. (2012) <doi:10.1134/S0005117912020154>.

Implementation of Robust Regression tailored to deal with Asymmetric noise Distribution, which was originally proposed by Takeuchi & Bengio & Kanamori (2002) <doi:10.1162/08997660260293300>. In addition, this implementation is extended as introducing potential feature regularization by LASSO etc.

This package provides graphical user interfaces to organize and visualize Nanopore sequencing data.

This package provides tools for the estimation and simulation of latent variable models.

This package provides unit root and cointegration tests encountered in applied econometric analysis.

This package provides functionality for generating (randomized) quasi-random numbers in high dimensions.

This package provides tools to normalize (several) Hi-C data from replicates.

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

The package is designed to detect marker genes from RNA-seq data.

Use dynamic programming method to solve l1 convex clustering with identical weights.

Builds statistical control charts with exact limits for univariate and multivariate cases.

This package provides arrays with flexible control over dimension dropping when subscripting.

Computes analytical critical points for nonlinear growth models from known parameter values.

Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.

Patient Rule Induction Method (PRIM) for bump hunting in high-dimensional data.

To find the certainty of dominance interactions with indirect interactions being considered.

This package provides a simple implementation of the Predictive Information Index ('PII').

Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).