Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symptom based administration of diagnostic tests. <doi:10.1101/2020.09.24.20200238>.

This package provides functions to access historical and real-time national hydrometric data from Water Survey of Canada data sources and then applies tidy data principles.

Simplify reporting many tables by creating tibbles of tables. With tabtibble', a tibble of tables is created with captions and automatic printing using knit_print()'.

Consistent with knitr syntax highlighting, usedthese adds a summary table of package & function usage to a Quarto document and enables aggregation of usage across a website.

This package provides access to the Vagalume API <https://api.vagalume.com.br>. The data extracted is basically lyrics of songs and information about artists/bands.

Apply Wordpiece (<arXiv:1609.08144>) tokenization to input text, given an appropriate vocabulary. The BERT (<arXiv:1810.04805>) tokenization conventions are used by default.

This package provides an easy way to report the results of ROC analysis, including: 1. an ROC curve. 2. the value of Cutoff, AUC (Area Under Curve), ACC (accuracy), SEN (sensitivity), SPE (specificity), PLR (positive likelihood ratio), NLR (negative likelihood ratio), PPV (positive predictive value), NPV (negative predictive value), PPA (percentage of positive accordance), NPA (percentage of negative accordance), TPA (percentage of total accordance), KAPPA (kappa value).

Visualization platform for T cell receptor repertoire analysis output results. It includes comparison of sequence frequency among samples, network of similar sequences and convergent recombination source between species. Currently repertoire analysis is in early stage of development and requires new approaches for repertoire data examination and assessment as we intend to develop. No publication is available yet (will be available in the near future), Efroni (2021) <https:>.

This package provides functions to safely map from a vector of keys to a vector of values, determine properties of a given relation, or ensure a relation conforms to a given type, such as many-to-many, one-to-many, injective, surjective, or bijective. Permits default return values for use similar to a vectorised switch statement, as well as safely handling large vectors, NAs, and duplicate mappings.

Calculates relevance and significance values for simple models and for many types of regression models. These are introduced in Stahel, Werner A. (2021) "Measuring Significance and Relevance instead of p-values." <https://stat.ethz.ch/~stahel/relevance/stahel-relevance2103.pdf>. These notions are also applied to replication studies, as described in the manuscript Stahel, Werner A. (2022) "'Replicability': Terminology, Measuring Success, and Strategy" available in the documentation.

Robust generalized linear models (GLM) using a mixture method, as described in Beath (2018) <doi:10.1080/02664763.2017.1414164>. This assumes that the data are a mixture of standard observations, being a generalised linear model, and outlier observations from an overdispersed generalized linear model. The overdispersed linear model is obtained by including a normally distributed random effect in the linear predictor of the generalized linear model.

int64 values can be created and accessed via the bit64 package and its integer64 class which package the int64 representation cleverly into a double. The nanotime package builds on this to support nanosecond-resolution timestamps. This package helps conversions between R and C++ via several helper functions provided via a single header file. A complete example client package is included as an illustration.

The purpose of biocViews is to create HTML pages that categorize packages in a Bioconductor package repository according to keywords, also known as views, in a controlled vocabulary.

This package provides a number of user-level functions to work with grid graphics, notably to arrange multiple grid-based plots on a page, and draw tables.

This package provides a parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.

This package provides a set of tools to permute multisets without loops or hash tables and to generate integer partitions. Cool-lex order is similar to colexicographical order.

This package provides a re-implementation of the gWidgets API. The API is defined in this package. A second, toolkit-specific package is required to use it.

ExecJS lets you run JavaScript code from Ruby. It automatically picks a runtime to evaluate your JavaScript program, then returns the result to you as a Ruby object.

Fuubar is an RSpec formatter that uses a progress bar instead of a string of letters and dots as feedback. It also stops on the first test failure.

Data package which provides default drug profiles for the DrugVsDisease package as well as associated gene lists and data clusters used by the DrugVsDisease package.

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

This package provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and Pseudo R Square. Aberson, C. L. (2022) <doi:10.31234/osf.io/s2yqn>.

The data and meta data from Statistics Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses the open data API of Statistics Netherlands.