High dimensional survival data analysis with Markov Chain Monte Carlo(MCMC). Currently supports frailty data analysis. Allows for Weibull and Exponential distribution. Includes function for interval censored data.

Import classification results from the RDP Classifier (Ribosomal Database Project), USEARCH sintax, vsearch sintax and the QIIME2 (Quantitative Insights into Microbial Ecology) classifiers into phyloseq tax_table objects.

Provide utilities to work with solar time, i.e. where noon is exactly when sun culminates. Provides functions for computing sun position and times of sunrise and sunset.

Quantify stratigraphic disorder using the metrics defined by Burgess (2016) <doi:10.2110/jsr.2016.10>. Contains a range of utility tools to construct and manipulate stratigraphic columns.

This package provides functions for the computationally efficient simulation of dynamic networks estimated with the statistical framework of temporal exponential random graph models, implemented in the tergm package.

This package provides a Shiny application for the interactive visualisation and analysis of networks that also provides a web interface for collecting social media data using vosonSML'.

This package provides a WebSocket client interface for R. WebSocket is a protocol for low-overhead real-time communication: <https://en.wikipedia.org/wiki/WebSocket>.

This package provides fast algorithms for the Theil-Sen estimator, Siegel's repeated median slope estimator, and Passing-Bablok regression. The implementation is based on algorithms by Dillencourt et al. (1992) <doi:10.1142/S0218195992000020> and Matousek et al. (1998) <doi:10.1007/PL00009190>. The implementations are detailed in Raymaekers (2023) <doi:10.32614/RJ-2023-012> and Raymaekers J., Dufey F. (2022) <arXiv:2202.08060>. All algorithms run in quasilinear time.

Infer log-linear Poisson Graphical Model with an auxiliary data set. Hot-deck multiple imputation method is used to improve the reliability of the inference with an auxiliary dataset. Standard log-linear Poisson graphical model can also be used for the inference and the Stability Approach for Regularization Selection (StARS) is implemented to drive the selection of the regularization parameter. The method is fully described in <doi:10.1093/bioinformatics/btx819>.

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.

Implemented fast and memory-efficient Notch-filter, Welch-periodogram, discrete wavelet spectrogram for minutes of high-resolution signals, fast 3D convolution, image registration, 3D mesh manipulation; providing fundamental toolbox for intracranial Electroencephalography (iEEG) pipelines. Documentation and examples about RAVE project are provided at <https://rave.wiki>, and the paper by John F. Magnotti, Zhengjia Wang, Michael S. Beauchamp (2020) <doi:10.1016/j.neuroimage.2020.117341>; see citation("ravetools") for details.

Detecting outliers using robust methods, i.e. the Median Absolute Deviation (MAD) for univariate outliers; Leys, Ley, Klein, Bernard, & Licata (2013) <doi:10.1016/j.jesp.2013.03.013> and the Mahalanobis-Minimum Covariance Determinant (MMCD) for multivariate outliers; Leys, C., Klein, O., Dominicy, Y. & Ley, C. (2018) <doi:10.1016/j.jesp.2017.09.011>. There is also the more known but less robust Mahalanobis distance method, only for comparison purposes.

The goal of sansSouci is to perform post hoc inference: in a multiple testing context, sansSouci provides statistical guarantees on possibly user-defined and/or data-driven sets of hypotheses.

This package is a set of R functions for generating precise figures. This tool helps you to create clean markdown reports about what you just discovered with your analysis script.

This package preloads class unions for defining/loading core OOMPA tools. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new colorschemes.

This package provides tidy tools for quantifying how well a model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).

This package converts between R and Simple Feature sf objects, without depending on the Simple Feature library. Conversion functions are available at both the R level, and through Rcpp.

This package provides functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.

Red Eclipse is an arena shooter, created from the Cube2 engine. Offering an innovative parkour system and distinct but all potent weapons, Red Eclipse provides fast paced and accessible gameplay.

Minima is a one-size-fits-all Jekyll theme for writers. It's Jekyll's default (and first) theme. It's what you get when you run jekyll new.

This package provides a collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.

This package provides functions to calculate the assortment of vertices in social networks. This can be measured on both weighted and binary networks, with discrete or continuous vertex values.

Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-012-0193-x>. Subnational projections are also supported.

Fits Bayesian grouped weighted quantile sum (BGWQS) regressions for one or more chemical groups with binary outcomes. Wheeler DC et al. (2019) <doi:10.1016/j.sste.2019.100286>.