This package provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported.

This package provides statistical models of biased sampling in the form of univariate and multivariate noncentral hypergeometric distributions, including Wallenius' noncentral hypergeometric distribution and Fisher's noncentral hypergeometric distribution (also called extended hypergeometric distribution).

Encode to base58 using only Rust. This package is based on https://github.com/trezor/trezor-crypto/blob/master/base58.c at commit c6e7d37. However, this package works only up to 128 bytes.

This library provides readers for the the following sequence formats:

• FASTA,

• FASTQ (including multi-line FASTQ),

• FASTX: Automatic recognition of the sequence format (either FASTA or FASTQ).

This package provides a python module for generating random strings of various types. It could be useful for fuzz testing, generating dummy data, or other applications. It has no dependencies outside the standard library.

The Wapiti-Ruby gem provides a wicked fast linear-chain CRF API for sequence segmentation and labelling. It is based on the codebase of Wapiti.

Conversion between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors. Plus conversion between 2 Euler angle set types (xyx, yzy, zxz, xzx, yxy, zyz, xyz, yzx, zxy, xzy, yxz, zyx). Fully vectorized code, with warnings/errors for Euler angles (singularity, out of range, invalid angle order), DCM (orthogonality, not proper, exceeded tolerance to unity determinant) and Euler vectors(not unity). Also quaternion and other useful functions. Based on SpinCalc by John Fuller and SpinConv by Paolo de Leva.

TROLL is coded in C++ and it typically simulates hundreds of thousands of individuals over hundreds of years. The rcontroll R package is a wrapper of TROLL'. rcontroll includes functions that generate inputs for simulations and run simulations. Finally, it is possible to analyse the TROLL outputs through tables, figures, and maps taking advantage of other R visualisation packages. rcontroll also offers the possibility to generate a virtual LiDAR point cloud that corresponds to a snapshot of the simulated forest.

This package provides functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.

FRACTRAN is an obscure yet tantalizing programming language invented by John Conway of Game of Life fame. The code consists of a sequence of fractions. The rules are simple. First, select an integer to initialize the process. Second, multiply the integer by the first fraction. If an integer results, start again with the new integer. If not, try the next fraction. Finally, if no such multiplication yields an integer, terminate the program. For more information, see <https://en.wikipedia.org/wiki/FRACTRAN> .

Parse R code in a given directory for R packages and attempt to install them from CRAN or GitHub. Optionally use a dependencies file for tighter control over which package versions to install.

An interactive document on the topic of binary logistic regression analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/BinaryLogisticRegressionModelling/>.

Implementation of a probabilistic method for biclustering adapted to overdispersed count data. It is a Gamma-Poisson Latent Block Model. It also implements two selection criteria in order to select the number of biclusters.

Compares two dataframes which have the same column structure to show the rows that have changed. Also gives a git style diff format to quickly see what has changed in addition to summary statistics.

This package provides a minimum set of functions to perform compositional data analysis using the log-ratio approach introduced by John Aitchison (1982). Main functions have been implemented in c++ for better performance.

Bindings to qpdf': qpdf (<https://qpdf.sourceforge.io/>) is a an open-source PDF rendering library that allows to conduct content-preserving transformations of PDF files such as split, combine, and compress PDF files.

Draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or PDF files that can be sent as such to journals.

Large language models are readily accessible via API. This package lowers the barrier to use the API inside of your development environment. For more on the API, see <https://platform.openai.com/docs/introduction>.

Create groups of ggplot2 layers that can be easily migrated from one plot to another, reducing redundant code and improving the ability to format many plots that draw from the same source ggpacket layers.

This package provides ggplot2 geoms analogous to geom_col() and geom_bar() that allow for treemaps using treemapify nested within each bar segment. Also provides geometries for subgroup bordering and text annotation.

Check if an externalptr is a null pointer. R does currently not have a native function for that purpose. This package contains a C function that returns TRUE in case of a null pointer.

This package provides tools for using the API of e-Stat (<https://www.e-stat.go.jp/>), a portal site for Japanese government statistics. Includes functions for automatic query generation, data collection and formatting.

Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of RcppArmadillo to speed up the calculation of distances between observations.

Automatically install, update, and load CRAN', GitHub', and Bioconductor packages in a single function call. By accepting bare unquoted names for packages, it's easy to add or remove packages from the list.