This package provides an interface to the GeoNode API, allowing to upload and publish metadata and data in GeoNode'. For more information about the GeoNode API, see <https://geonode.org/>.
It provides a general framework to analyse dependence between point processes in time. It includes parametric and non-parametric tests to study independence, and functions for generating and analysing different types of dependence.
Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or Office documents. Designed to work with pipes.
This package implements the compartment model from Tokars (2018) <doi:10.1016/j.vaccine.2018.10.026>. This enables quantification of population-wide impact of vaccination against vaccine-preventable diseases such as influenza.
Fitting recurrent events survival models for left-censored data with multiple imputation of the number of previous episodes. See Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.
This package provides customized forest plots for network meta-analysis incorporating direct, indirect, and NMA effects. Includes visualizations of evidence contributions through proportion bars based on the hat matrix and evidence flow decomposition.
Enables researchers to visualize the prediction performance of any algorithm on the individual level (or close to it), given that the predicted outcome is either binary or continuous. Visual results are instantly comprehensible.
An overall test for seasonality of a given time series in addition to a set of individual seasonality tests as described by Ollech and Webel (forthcoming): An overall seasonality test. Bundesbank Discussion Paper.
Add indicators (spinner, progress bar, gif) in your shiny applications to show the user that the server is busy. And other tools to let your users know something is happening (send notifications, reports, ...).
This package implements combined p-value functions for two trials along with compatible combined point and interval estimates as described in Pawel, Roos, and Held (2025) <doi:10.48550/arXiv.2503.10246>.
The most used functions on IPEA (Instituto de Pesquisa Economica Aplicada). Most of functions deal with brazilian names. It can guess the women single's name, extract prepositions or extract the first name.
This package provides a workflow for your analysis projects by combining literate programming ('knitr and rmarkdown') and version control ('Git', via git2r') to generate a website containing time-stamped, versioned, and documented results.
This package provides functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Conversion between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors. Plus conversion between 2 Euler angle set types (xyx, yzy, zxz, xzx, yxy, zyz, xyz, yzx, zxy, xzy, yxz, zyx). Fully vectorized code, with warnings/errors for Euler angles (singularity, out of range, invalid angle order), DCM (orthogonality, not proper, exceeded tolerance to unity determinant) and Euler vectors(not unity). Also quaternion and other useful functions. Based on SpinCalc by John Fuller and SpinConv by Paolo de Leva.
TROLL is coded in C++ and it typically simulates hundreds of thousands of individuals over hundreds of years. The rcontroll R package is a wrapper of TROLL'. rcontroll includes functions that generate inputs for simulations and run simulations. Finally, it is possible to analyse the TROLL outputs through tables, figures, and maps taking advantage of other R visualisation packages. rcontroll also offers the possibility to generate a virtual LiDAR point cloud that corresponds to a snapshot of the simulated forest.
FRACTRAN is an obscure yet tantalizing programming language invented by John Conway of Game of Life fame. The code consists of a sequence of fractions. The rules are simple. First, select an integer to initialize the process. Second, multiply the integer by the first fraction. If an integer results, start again with the new integer. If not, try the next fraction. Finally, if no such multiplication yields an integer, terminate the program. For more information, see <https://en.wikipedia.org/wiki/FRACTRAN> .
The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.
This package provides a pure Python based parser generator, that also works with RPython. It is a more-or-less direct port of David Bazzley's PLY, with a new public API, and RPython support.
1D NMR example spectra and additional data for use with the ASICS package. Raw 1D Bruker spectral data files were found in the MetaboLights database (https://www.ebi.ac.uk/metabolights/, study MTBLS1).
This package provides a set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.
Parse R code in a given directory for R packages and attempt to install them from CRAN or GitHub. Optionally use a dependencies file for tighter control over which package versions to install.
An interactive document on the topic of binary logistic regression analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/BinaryLogisticRegressionModelling/>.
Bindings to qpdf': qpdf (<https://qpdf.sourceforge.io/>) is a an open-source PDF rendering library that allows to conduct content-preserving transformations of PDF files such as split, combine, and compress PDF files.
Implementation of a probabilistic method for biclustering adapted to overdispersed count data. It is a Gamma-Poisson Latent Block Model. It also implements two selection criteria in order to select the number of biclusters.